Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0251
(695 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0143 + 31962241-31962291,31962385-31962506,31962572-319626... 91 8e-19
06_01_1040 + 8163654-8163704,8163814-8163935,8164011-8164092,816... 90 1e-18
09_04_0439 - 17594131-17594271,17595018-17595100,17595199-175953... 47 1e-05
08_02_1017 - 23616244-23616381,23616471-23616537,23617160-236172... 44 1e-04
01_06_0270 + 28048449-28048577,28048915-28048978,28049537-280496... 31 1.2
03_05_1133 - 30614901-30615389,30615823-30615933,30616113-306161... 30 1.5
01_01_0219 + 1863478-1864041,1864459-1865109 30 1.5
12_02_1193 + 26891619-26892456,26892545-26893884 30 2.0
07_03_0695 + 20753281-20753802 29 3.5
04_03_0572 + 17310729-17310746,17312209-17312902,17312991-173134... 29 3.5
06_03_0339 - 19687749-19690805 29 4.7
03_05_0522 - 25161595-25162285,25162394-25163139 29 4.7
03_05_0525 + 25200207-25200580,25201061-25201751 28 6.2
04_04_1089 - 30758700-30758857,30760016-30760115,30760364-30760918 28 8.1
>03_06_0143 +
31962241-31962291,31962385-31962506,31962572-31962671,
31962775-31962822,31963096-31963251,31963330-31963426,
31963525-31963567,31963970-31964037,31964139-31964223,
31964297-31964345,31964566-31964638,31964708-31964768,
31965417-31965483,31965709-31965762,31965854-31965982,
31966485-31966548,31966655-31966728,31966793-31966867,
31966972-31967040,31967759-31967848,31968014-31968121,
31968251-31968298
Length = 576
Score = 91.1 bits (216), Expect = 8e-19
Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 4/170 (2%)
Frame = -2
Query: 652 YQLIHQGTRLIP--WISSLQPKLTIQFRMVFTTRSSS*FLGSNRSPDEGQTADEAKAELE 479
YQLIHQG R+IP +I ++ + + + + PD + +
Sbjct: 396 YQLIHQG-RVIPCDFIGVVKSQQPVYLKGEIVSNHDELMSNFFAQPDALAYGKQFTGYFQ 454
Query: 478 KSGM--APEAIDKILPHKVFKGNRPTNSIVLKKITPFTLGALIAMYEHKIFTQGVIWDIN 305
+ + + ++PHK F+GNRP+ S++L ++ + +G L+A+YEH+I QG +W IN
Sbjct: 455 TPEQLHSEKVPEHLIPHKTFQGNRPSLSLLLPSLSAYEIGQLLAIYEHRIAVQGFLWGIN 514
Query: 304 SYDQWGVELGKQLAKAMSLSCRGLQL*PATTLPRMDSLTSSRRTFEIIVE 155
S+DQWGVELGK LA + S ++ L +S T+S T + VE
Sbjct: 515 SFDQWGVELGKSLASQVRKSLHASRVEGKPVL-GFNSSTTSLLTRYLAVE 563
Score = 36.3 bits (80), Expect = 0.023
Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = -3
Query: 684 GEPGTNGQHASTSSYTRE---PD*FHGFHRSSPNSQSNFEWCSPQDPL-ANFLAQTEALM 517
GEPGTNGQH+ + P F G +S E S D L +NF AQ +AL
Sbjct: 385 GEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLKGEIVSNHDELMSNFFAQPDALA 444
Query: 516 KGKQLT 499
GKQ T
Sbjct: 445 YGKQFT 450
>06_01_1040 +
8163654-8163704,8163814-8163935,8164011-8164092,
8164166-8164213,8164516-8164671,8164747-8164843,
8164942-8164984,8165375-8165442,8165533-8165617,
8165698-8165746,8165968-8166040,8166119-8166179,
8167114-8167180,8167400-8167453,8167537-8167665,
8168192-8168255,8168366-8168439,8168523-8168576,
8168696-8168764,8169394-8169483,8169656-8169763,
8169876-8169923
Length = 563
Score = 90.2 bits (214), Expect = 1e-18
Identities = 57/171 (33%), Positives = 92/171 (53%), Gaps = 5/171 (2%)
Frame = -2
Query: 652 YQLIHQGTRLIP--WISSLQPKLTIQFRMVFTTRSSS*FLGSNRSPDE---GQTADEAKA 488
YQLIHQG R+IP +I ++ + + + + PD G+T ++ +
Sbjct: 390 YQLIHQG-RVIPCDFIGVVKSQQPVYLKGEIVSNHDELMSNFFAQPDALAYGKTPEQLHS 448
Query: 487 ELEKSGMAPEAIDKILPHKVFKGNRPTNSIVLKKITPFTLGALIAMYEHKIFTQGVIWDI 308
E PE ++ HK F+GNRP+ S++L ++ + +G L+++YEH+I QG +W I
Sbjct: 449 E-----KVPE---HLISHKTFQGNRPSLSLLLPSLSAYEIGQLLSIYEHRIAVQGFLWGI 500
Query: 307 NSYDQWGVELGKQLAKAMSLSCRGLQL*PATTLPRMDSLTSSRRTFEIIVE 155
NS+DQWGVELGK LA + S ++ + +S T+S T + VE
Sbjct: 501 NSFDQWGVELGKSLASQVRKSLHASRM-EGKPVQGFNSSTASLLTRYLAVE 550
Score = 32.3 bits (70), Expect = 0.38
Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = -3
Query: 684 GEPGTNGQHASTSSYTRE---PD*FHGFHRSSPNSQSNFEWCSPQDPL-ANFLAQTEALM 517
GEPGTNGQH+ + P F G +S E S D L +NF AQ +AL
Sbjct: 379 GEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLKGEIVSNHDELMSNFFAQPDALA 438
Query: 516 KGK 508
GK
Sbjct: 439 YGK 441
>09_04_0439 -
17594131-17594271,17595018-17595100,17595199-17595355,
17595438-17595576,17595668-17595720,17596150-17596257,
17596345-17596413,17596505-17596570,17596651-17596794,
17597372-17597455,17597539-17597637,17597753-17597875,
17598283-17598831
Length = 604
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/56 (35%), Positives = 37/56 (66%)
Frame = -2
Query: 430 VFKGNRPTNSIVLKKITPFTLGALIAMYEHKIFTQGVIWDINSYDQWGVELGKQLA 263
++ +R + S+ ++++TP +GAL+A+YE + + +IN+Y Q GVE GK+ A
Sbjct: 484 LYSNDRESISVTVQEVTPRAVGALVALYERAVGIYASLVNINAYHQPGVEAGKKAA 539
>08_02_1017 -
23616244-23616381,23616471-23616537,23617160-23617238,
23617330-23617486,23617581-23617719,23617820-23617872,
23618037-23618120,23618291-23618359,23618488-23618553,
23618657-23618800,23619331-23619414,23619498-23619596,
23620097-23620219,23620745-23621290
Length = 615
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/56 (32%), Positives = 36/56 (64%)
Frame = -2
Query: 430 VFKGNRPTNSIVLKKITPFTLGALIAMYEHKIFTQGVIWDINSYDQWGVELGKQLA 263
++ +R + ++ ++++ P +GAL+A+YE + + +IN+Y Q GVE GK+ A
Sbjct: 475 LYANDRESITVTVQEVNPRAVGALVALYERAVGLYAYLININAYHQPGVEAGKKAA 530
>01_06_0270 +
28048449-28048577,28048915-28048978,28049537-28049638,
28049971-28050021,28050075-28050172,28050395-28050485,
28050718-28050782,28050913-28051107,28051207-28051326,
28051592-28051662,28051787-28052012,28052330-28052407,
28052507-28052735,28052958-28053097,28053571-28053699
Length = 595
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/90 (26%), Positives = 44/90 (48%)
Frame = -2
Query: 667 RTARLYQLIHQGTRLIPWISSLQPKLTIQFRMVFTTRSSS*FLGSNRSPDEGQTADEAKA 488
+T ++ + R + ++SS + +L QF + S++ F +R +E + +
Sbjct: 407 KTIKIKSIESPAYRTLAFVSSFKHELN-QFPTLRVEISNAAFESLDRMRNESKKSTLKLV 465
Query: 487 ELEKSGMAPEAIDKILPHKVFKGNRPTNSI 398
++E S + + K LP V KG PTNSI
Sbjct: 466 DMECSYLTVDFFWK-LPQDVEKGGNPTNSI 494
>03_05_1133 -
30614901-30615389,30615823-30615933,30616113-30616178,
30616347-30616406,30616493-30616801,30616960-30617108,
30617200-30617269,30617370-30617494,30617516-30617573,
30618176-30618370,30618585-30618857,30618950-30619120,
30619203-30619333,30619423-30619582,30619712-30619900,
30620023-30620118,30620381-30620611,30620715-30620853,
30620903-30621057,30621160-30621378
Length = 1131
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +3
Query: 414 RFPLNTLCGRILSIASGAIPDFSSSALASSA 506
R PLN+LC +I S+ G+I +F S+AL A
Sbjct: 681 RTPLNSLCLQIKSLQVGSIGEFLSAALQPPA 711
>01_01_0219 + 1863478-1864041,1864459-1865109
Length = 404
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -1
Query: 695 PIVWASPGPTDSTPLPAHT-PGNQIDSMDFIAPA-QTHN 585
P VW P P+ STP PA + P M F+AP+ THN
Sbjct: 68 PCVWPPPLPS-STPTPAPSPPSTPTGLMGFLAPSGVTHN 105
>12_02_1193 + 26891619-26892456,26892545-26893884
Length = 725
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Frame = +3
Query: 357 ISAPKVNGVIFFRTIEFVG-RFPLNTLCGRILSIASGAIPDFSSSALASSAV----CPSS 521
+ P N + F G RFP N L IL + +P S SAL A+ C +S
Sbjct: 59 VPKPVDNRTVVFAVFFEAGLRFPCNVLLPEILRLFQVELPQLSPSALVRIAIFDWACRTS 118
Query: 522 GLRFEP 539
G FEP
Sbjct: 119 G--FEP 122
>07_03_0695 + 20753281-20753802
Length = 173
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2
Query: 566 EHHSKLDCEFGL 601
EHH K+DCEFGL
Sbjct: 143 EHHMKVDCEFGL 154
>04_03_0572 +
17310729-17310746,17312209-17312902,17312991-17313400,
17325755-17326063
Length = 476
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = +3
Query: 381 VIFFRTIEFVGRFPLNTLCGRILSIASGAIPDFSSSALASSAV----CPSSGLRFEP 539
V+F E RFP N L IL + +P S SAL A+ C +S RFEP
Sbjct: 26 VVFAVFFEAGLRFPCNVLLPEILRLFQVELPQLSPSALVRIAIFDWACRTS--RFEP 80
>06_03_0339 - 19687749-19690805
Length = 1018
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 266 GQGNEPELQGTAAVTGHDASTNGLINF 186
G+ NE +L GHD TNG+ N+
Sbjct: 400 GENNETKLNADTTGPGHDGPTNGVNNY 426
>03_05_0522 - 25161595-25162285,25162394-25163139
Length = 478
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 633 EPD*FHGFHRSSPNSQSNFEWCSPQDPLANFLAQTEALMKGKQLTRL 493
+P FH + +P +++NFEW S D + + +E G LT L
Sbjct: 358 DPSHFHSPNDEAP-TENNFEWHSDDDDIVDNQCNSEERNSGDYLTFL 403
>03_05_0525 + 25200207-25200580,25201061-25201751
Length = 354
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 633 EPD*FHGFHRSSPNSQSNFEWCSPQDPLANFLAQTEALMKGKQLTRL 493
+P FH + +P +++NFEW S D + + +E G LT L
Sbjct: 234 DPSHFHSPNDEAP-AENNFEWHSDDDDIIDNQCNSEERNSGDYLTFL 279
>04_04_1089 - 30758700-30758857,30760016-30760115,30760364-30760918
Length = 270
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 219 AGHSCSPLQLRLIALANCLPSSTPH*SYELISQITPCVKILCSYMAIS 362
A H C L ++LI+ A C+ SS L+ + P V L ++ IS
Sbjct: 18 AQHLCGFLSMKLISRARCVASSVKQSYSFLVCKSNPLVVQLVYFVIIS 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,050,494
Number of Sequences: 37544
Number of extensions: 436170
Number of successful extensions: 1230
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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