Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0251
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.91 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   8.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.5  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   8.5  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   8.5  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -1

Query: 326 RCDL--GYQFIRSMGS*TRQAIGQGNEPELQGTAAV 225
           RC+    + +I S G   R  +  GNE E++GT +V
Sbjct: 363 RCNATGAFSWIGSDGWSARGLVSDGNEAEVEGTLSV 398


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 362 TYCHVRTQDLHARCDLGYQFI 300
           TY H+  QD+H    +G+ F+
Sbjct: 49  TYLHLLYQDVHVMIWIGFGFL 69


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 522 GLRFEPRN*LEDLVVNTIRNWIVSLGWS 605
           GL  +P + +   ++  I  W+ SLGW+
Sbjct: 157 GLSGKPLS-INGALIRIIAIWLFSLGWT 183


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = -2

Query: 598 PKLTIQFRMVFTTRSSS*FLGSNRSPDEGQTADEAKAELEKSGMAPEAIDKILPH 434
           P   I  ++  TT SSS   G   +   G  + ++     ++  A EA++ I  H
Sbjct: 403 PNCKINRKVHHTTSSSSAAGGEGLADRRGSESSDSVLLSPEASKATEAVEFIAEH 457


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 522 GLRFEPRN*LEDLVVNTIRNWIVSLGWS 605
           GL  +P + +   ++  I  W+ SLGW+
Sbjct: 123 GLSGKPLS-INGALIRIIAIWLFSLGWT 149


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 522 GLRFEPRN*LEDLVVNTIRNWIVSLGWS 605
           GL  +P + +   ++  I  W+ SLGW+
Sbjct: 33  GLSGKPLS-INGALIRIIAIWLFSLGWT 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,914
Number of Sequences: 438
Number of extensions: 4427
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)