Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0249
         (718 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q677T3 Cluster: Putative uncharacterized protein; n=2; ...    36   0.76 

>UniRef50_Q677T3 Cluster: Putative uncharacterized protein; n=2;
           Lymphocystivirus|Rep: Putative uncharacterized protein -
           Lymphocystis disease virus - isolate China
          Length = 252

 Score = 36.3 bits (80), Expect = 0.76
 Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
 Frame = -2

Query: 333 YKLYK*NKSCMKKNEGY*FGQTIRINLNIRQFLIRKFRTLKL-VSEVTLYHNYHTKLDN- 160
           + LYK  K C+KK +G    QT +I   I   L +KF++ KL + +V  +  Y     N 
Sbjct: 87  HSLYK-FKECLKKFQGQ---QTCKIPDKIYHELEKKFKSYKLLIPDVESFVKYSKITKNH 142

Query: 159 ILLMDET*KFGTIYY-LFVMYYIIYMYKDVTVHIEMIYLRTFL 34
           +L+  +  K+   Y  + ++YY++   K+   H+E + +  F+
Sbjct: 143 VLIFLKELKYSKQYENVNLIYYVLTNKKENVSHLETVLIEDFI 185


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 597,779,982
Number of Sequences: 1657284
Number of extensions: 10787084
Number of successful extensions: 19143
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 18391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19108
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)