Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0248
         (418 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0551 + 4361640-4363386,4363443-4363687                           27   6.0  
09_03_0042 + 11842263-11842698,11842799-11842896,11843082-118432...    27   6.0  
10_08_0364 + 17217631-17217833,17218134-17218308,17218391-172184...    27   8.0  
02_05_0405 + 28708077-28708391,28708478-28708573,28709030-287094...    27   8.0  

>11_01_0551 + 4361640-4363386,4363443-4363687
          Length = 663

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 283 PFMWPKTRSTINYHHNNCTHSEXTA 357
           P  WP++R  I YH  N  HSE  A
Sbjct: 396 PIRWPRSRDKIWYH--NVPHSELAA 418


>09_03_0042 +
           11842263-11842698,11842799-11842896,11843082-11843217,
           11843349-11843509,11843603-11843753,11843855-11843952,
           11844142-11844277,11844404-11844532,11844622-11844720,
           11844814-11844909,11845002-11845100,11845201-11845296,
           11846394-11846628,11846752-11846873,11846993-11847114,
           11847275-11847345,11847940-11848027,11848374-11848439,
           11848676-11848795
          Length = 852

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 298 KTRSTINYHHNNCTHSEXTARRLCTTTEQPQSGKG 402
           K +S  +  ++    S+ +A  +CTT+  P SGKG
Sbjct: 681 KEQSQGSTRNHQTESSKDSAPAMCTTSSDPPSGKG 715


>10_08_0364 +
           17217631-17217833,17218134-17218308,17218391-17218474,
           17218561-17218802,17218883-17219108,17219246-17219325,
           17219408-17219492,17219665-17219796,17219927-17220040,
           17220123-17220170,17220413-17220497,17220722-17220834
          Length = 528

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 223 QKITRQRYFESSLYSIAARYIFILCNNSTRNHV 125
           +K   +R    SL+ I +R + +LC++S R H+
Sbjct: 496 KKEKAKRPSAKSLFGIPSRALAVLCSSSIRRHI 528


>02_05_0405 +
           28708077-28708391,28708478-28708573,28709030-28709450,
           28710051-28710141,28710483-28710819,28710905-28711053,
           28711782-28712295
          Length = 640

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 76  KIYPLYINKYIMKNILSHDFVW 141
           K++ LY++KYIMK    H+  W
Sbjct: 534 KLFKLYLDKYIMKAGEKHEKSW 555


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,584,220
Number of Sequences: 37544
Number of extensions: 167565
Number of successful extensions: 347
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)