Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0248
         (418 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2014| Best HMM Match : MAM (HMM E-Value=0)                          30   0.88 
SB_28271| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14)                 29   1.2  
SB_23391| Best HMM Match : 7tm_1 (HMM E-Value=1e-24)                   28   2.7  
SB_47880| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.7  
SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.7  

>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
          Length = 2282

 Score = 29.9 bits (64), Expect = 0.88
 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 94   INKYIMKNILSHDFVWNYYII*I-YTLLQWNKDYFRNTFVWLSSAL 228
            ++  ++ N+   DF+   Y++ I +  +QW  +YF++   W  S L
Sbjct: 1809 VHSLLLTNLAISDFMMGLYLLIIAFKDVQWQGEYFKHDLSWRVSGL 1854


>SB_28271| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14)
          Length = 686

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 97  NKYIMKNILSHDFVWNYYII*IYTL-LQWNKDYFRNTFVWLSSAL 228
           + +++ N+   D++   Y+I I    L+W  +YF++   W SS L
Sbjct: 31  HSFLLTNLAVADWLMGCYLIIIAIKDLEWRGEYFKHDVAWRSSRL 75


>SB_23391| Best HMM Match : 7tm_1 (HMM E-Value=1e-24)
          Length = 540

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 94  INKYIMKNILSHDFVWNYYII*I-YTLLQWNKDYFRNTFVWLSSAL 228
           +   ++ N+   DF+   Y++ I +  +QW  +YF+    W  S L
Sbjct: 95  VQSLLLTNLAISDFMMGLYLLIIAFKDVQWQGEYFKYDLSWRVSGL 140


>SB_47880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 301 TRSTINYHHNNCTHSEXTARRLCTTTEQP 387
           TR    Y  ++C  S   ARR+CTT + P
Sbjct: 61  TRIKRYYRCHSCNDSNALARRVCTTCKAP 89


>SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 244 HNVASVSLHI*I*PFMWPKTRSTINYHHN-NCTHSEXTARRLCTTTEQPQS 393
           H+ A  ++HI I     P T S+  YHH+ +  HS  T   +  T   P S
Sbjct: 201 HHSAITNIHIIITAPSPPSTSSSQRYHHHPHHHHSAITTIHIIITAPSPPS 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,558,088
Number of Sequences: 59808
Number of extensions: 212775
Number of successful extensions: 453
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)