Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0247
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    86   2e-18
SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces po...    25   4.7  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   6.2  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 86.2 bits (204), Expect = 2e-18
 Identities = 41/83 (49%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
 Frame = -1

Query: 252 AHHSLIENNFSQTKQRLFLTILLGFYFTILQAYEYIEASFTIADRIYGSTFFIATGFHGI 73
           AH+SLI  N     + L++TI L F F   QAYEY  A FTI+D +YG++F+ ATG HGI
Sbjct: 159 AHYSLIARNRENALKGLYMTIALSFLFLGGQAYEYWNAPFTISDSVYGASFYFATGLHGI 218

Query: 72  HVIIGTLFLLIC----YIRHLNN 16
           H+I+GT+ LL+     Y  HL N
Sbjct: 219 HIIVGTILLLVATYNIYTYHLTN 241



 Score = 44.8 bits (101), Expect = 7e-06
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = -2

Query: 383 HRRLSPNIEIGRIXPPSRITP--FNPFQIPLLNTIILIRSGVXVT 255
           H  LSP  E+G + PP  I     +P ++PLLNT+IL+ SG  +T
Sbjct: 113 HSSLSPTFELGAVWPPVGIADKTIDPLEVPLLNTVILLTSGASLT 157


>SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -1

Query: 237 IENNFSQTKQRLFLTILLGFYFTILQAYE 151
           +  ++S T  RL++ ++ G Y + L++Y+
Sbjct: 8   LSRSYSTTSPRLYVDVVQGLYISSLKSYK 36


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 358 KLEEYXPLQELHHLIHSKFPY 296
           ++EEY P +E ++L+ S + Y
Sbjct: 447 QIEEYFPFEEFYYLLSSIYTY 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,599,511
Number of Sequences: 5004
Number of extensions: 26853
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)