Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0247
         (492 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0529 - 19107949-19108152,19108857-19109147,19109817-191099...    28   4.7  
03_06_0098 + 31641760-31642386,31643173-31644114                       27   6.2  

>07_03_0529 -
           19107949-19108152,19108857-19109147,19109817-19109939,
           19110019-19110306
          Length = 301

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 255 RAHHSLIENNFSQTKQRLFLTILLGFYFTILQAYEYIEASFTIADR 118
           ++HH  ++    Q   +  L I+   +F++LQ Y Y  A ++ ADR
Sbjct: 248 QSHHFWLDVEHIQEAIQNVLVIIEMVFFSVLQQYAYHVAPYSGADR 293


>03_06_0098 + 31641760-31642386,31643173-31644114
          Length = 522

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = -1

Query: 258 NRAHHSLIENNFSQTKQRLFLTILLGFYFTILQAYEYIEASFTIA---DRIYGSTFFIAT 88
           N A   LI+ +  +  + L +  LLGF   +L   EY+EA   +    + +  S   + +
Sbjct: 190 NDAKQRLIKQSVPRVLRILKVAELLGFQACVLSCLEYLEAVPWVGEEEENVVSSVQHLQS 249

Query: 87  GFHGIHVII 61
           G +G+  I+
Sbjct: 250 GNYGVSPIL 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,940,816
Number of Sequences: 37544
Number of extensions: 134013
Number of successful extensions: 250
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)