Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0246
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   112   5e-26
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   7.3  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   9.6  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  112 bits (269), Expect = 5e-26
 Identities = 52/85 (61%), Positives = 69/85 (81%), Gaps = 1/85 (1%)
 Frame = +1

Query: 1   VGIDIDTRAYFTSATIIIAVPTGIKIXR*LATIHGTQINYNP-NIL*RLGFVFLFTVGGL 177
           VG+D+DTRAYF++AT++IA+PTGIKI   LAT+ G  I ++   +L  +GF+ LFT+GGL
Sbjct: 301 VGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLYAIGFLILFTIGGL 360

Query: 178 TGVILANSSIDITLHDTYYVVAHFH 252
           TGVIL+NS +DI  HDTY+VVAHFH
Sbjct: 361 TGVILSNSVLDIAFHDTYFVVAHFH 385



 Score = 55.6 bits (128), Expect = 6e-09
 Identities = 25/42 (59%), Positives = 29/42 (69%)
 Frame = +3

Query: 309 PLFTGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRR 434
           P   GL  N  +  IQF+ +FIGVNI F PQHFLGL G+PRR
Sbjct: 404 PKMFGLMYNETLASIQFWILFIGVNIVFGPQHFLGLNGMPRR 445


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 317 YRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIFRL 445
           +RPF KFL  K  IF + YW +  +  T +      T  I+ L
Sbjct: 201 FRPFPKFLSVKAIIFAS-YWQQTVLSITNWLGLLNGTGWIYSL 242


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +1

Query: 175 LTGVILANSSIDITLHDTYYVV 240
           L  ++LAN+++D T+H  Y+++
Sbjct: 657 LDHILLANATLDKTVHSAYWLM 678


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,925,987
Number of Sequences: 5004
Number of extensions: 30716
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)