Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0246
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                  122   3e-28
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   2e-09
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score =  122 bits (294), Expect = 3e-28
 Identities = 55/82 (67%), Positives = 70/82 (85%)
 Frame = +1

Query: 7   IDIDTRAYFTSATIIIAVPTGIKIXR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTGV 186
           +++DTRAYFT+AT+IIAVPTGIK+   LAT++G  I  +  +L  +GFVFLFT+GGLTGV
Sbjct: 1   MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGV 60

Query: 187 ILANSSIDITLHDTYYVVAHFH 252
           ILANSS+D+ +HDTYYVVAHFH
Sbjct: 61  ILANSSLDVVMHDTYYVVAHFH 82



 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 27/39 (69%), Positives = 29/39 (74%)
 Frame = +3

Query: 318 TGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRR 434
           TG   N    KI F+ +FIGVNITFFPQHFLGLAG PRR
Sbjct: 105 TGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRR 143



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 587 SIE*YQNLPPAEHSYNELPIL 649
           S+E  Q  PPA H+YNELP +
Sbjct: 199 SLEWVQQSPPALHTYNELPFV 219


>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 27/39 (69%), Positives = 29/39 (74%)
 Frame = +3

Query: 318 TGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRR 434
           TG   N    KI F+ +FIGVNITFFPQHFLGLAG PRR
Sbjct: 19  TGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRR 57



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 587 SIE*YQNLPPAEHSYNELPIL 649
           S+E  Q  PPA H+YNELP +
Sbjct: 113 SLEWVQQSPPALHTYNELPFV 133


>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +2

Query: 305 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIFSTTFFRFSWNT 427
           + FIY   + FL +KN  F+  YW+   YN F        W T
Sbjct: 14  VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAFGQRSPNSRWRT 56


>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 587 SIE*YQNLPPAEHSYNELPIL 649
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 587 SIE*YQNLPPAEHSYNELPIL 649
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 587 SIE*YQNLPPAEHSYNELPIL 649
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 587 SIE*YQNLPPAEHSYNELPIL 649
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 587 SIE*YQNLPPAEHSYNELPIL 649
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,735,034
Number of Sequences: 59808
Number of extensions: 184610
Number of successful extensions: 325
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)