Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0246
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05084.1 68415.m00532 hypothetical protein                          29   2.7  
At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR...    28   4.8  
At5g34950.1 68418.m04124 replication protein-related weak simila...    27   8.3  
At2g19560.1 68415.m02285 proteasome protein-related weak similar...    27   8.3  

>At2g05084.1 68415.m00532 hypothetical protein
          Length = 258

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = +2

Query: 350 NSIFYNIYWSKY-NIFSTTFFRFSWNTSTIFRLSRLIYFMKY 472
           N I   I W +Y N F TT F   W     FRL R     KY
Sbjct: 48  NRIDARIPWGEYMNNFKTTLFEGKWYYLQHFRLKRATTIPKY 89


>At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1183

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 305  ISFIYRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIFRLSRL 454
            IS + R F+   Y++ + F  +  +KY+I ST   R SW      +L ++
Sbjct: 1021 ISDLVRDFMNEEYSQEAPFRLVCITKYSIASTNNMRTSWREPMRIKLPKI 1070


>At5g34950.1 68418.m04124 replication protein-related weak
           similarity to Replication Protein A 70  kDa DNA-binding
           subunit (RP-A) (RF-A) (Replication factor-A protein 1)
           (Single-stranded DNA-binding protein) (DMRPA1)
           (GI:2498844)(SP:Q24492) [Drosophila melanogaster]
          Length = 234

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
 Frame = +2

Query: 350 NSIFYNIYWSKY-NIFSTTFFRFSWNTSTIFRLSRLIYFMKY 472
           N I   I W +Y N F T  F   W     FRL R     KY
Sbjct: 48  NKIDARIPWGEYMNNFKTNLFEGKWYYLQHFRLKRATTIPKY 89


>At2g19560.1 68415.m02285 proteasome protein-related weak similarity
           to 26S proteasome non-ATPase regulatory subunit 3 (26S
           proteasome regulatory subunit S3) (p58) (Transplantation
           antigen P91A) (Tum-P91A antigen) (Swiss-Prot:P14685)
           [Mus musculus]
          Length = 413

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
 Frame = -2

Query: 495 YMNLMKKLYFMKYMSLDNLNIVEVFQLNLKNVVEKMLYL-LQ*IL*KIE----FLVYKNL 331
           Y  LMKK+Y  + +S    +     QL L+ + + + +L +   L ++E     L+YKNL
Sbjct: 328 YQRLMKKIYINQKLS----DPARAHQLKLEGIAKALRWLDMDMDLDEVECIMTILIYKNL 383

Query: 330 MKG 322
           +KG
Sbjct: 384 VKG 386


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,245,742
Number of Sequences: 28952
Number of extensions: 135364
Number of successful extensions: 259
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)