Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0245
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    28   1.5  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    27   3.4  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   4.5  
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c...    26   5.9  
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos...    26   5.9  
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    25   7.8  

>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 275 FASKSRDLRSIKGVELKMANKVYVHDGGKLDE 370
           FA + ++L   KGV+L M +   +HDG  L +
Sbjct: 79  FALRMKELADFKGVDLLMVDTGDLHDGNGLSD 110


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 22/59 (37%), Positives = 27/59 (45%)
 Frame = +2

Query: 362 LDENFAVVSRDVFNSDVQNIDFSKNTVAAKSINDWVEENTNNRIKDLVNRTRSAQPQRL 538
           LDE+  V+  D   S+    D   NT  +  I DWV E      KDLV  T +   QRL
Sbjct: 62  LDEHGGVLLEDNEKSN----DNKSNT--SSKIPDWVLEQDLKIQKDLVKETHARLEQRL 114


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 544 VNAIYFKGAWSSKFDERLTSDRDFYVSKDKTI 639
           V+A+ F+  W +    R T D DF   K KTI
Sbjct: 68  VSALKFEWNWQNLGISRYTKDCDFRSKKQKTI 99


>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 686 LSPYL*SPRLYIMGTLIVLSLLT*KSRSLVSRSS 585
           L   L SP LY+   ++   L T  SRSLV+RS+
Sbjct: 73  LDGLLYSPVLYLFSYILPSKLFTIFSRSLVNRSA 106


>SPAC631.01c |acp2||F-actin capping protein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 268

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 488 RIKDLVNRTRSAQPQRLFSSTPSISREHGVLN 583
           + KD++N+TRS QP  +  + P+ S    VLN
Sbjct: 235 KTKDIINQTRSIQP--VSDAQPNDSALRSVLN 264


>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 289 AFTREFCSYSIVSGKPIAFKSSSWVSPS 206
           +FT E+ +    +G P++  S   VSPS
Sbjct: 192 SFTHEYLTIDFYNGTPVSVSSKLHVSPS 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,519
Number of Sequences: 5004
Number of extensions: 52746
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)