Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0245
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0824 - 32243495-32244319,32244449-32244859 52 3e-07
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 49 4e-06
11_02_0011 - 7337618-7338496,7338596-7338991 46 2e-05
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 46 3e-05
11_02_0012 - 7346282-7347136,7347234-7347593 45 5e-05
11_01_0767 + 6438648-6438809,6439146-6440000 42 5e-04
11_02_0014 - 7352619-7352918,7353173-7353418 42 6e-04
05_06_0044 - 25150322-25151260 41 0.001
11_01_0771 + 6453130-6454488 38 0.008
11_01_0750 - 6315126-6315896,6316371-6316784 37 0.013
01_01_1152 + 9170628-9171899 36 0.023
04_04_0619 + 26652923-26653267,26653440-26654273 35 0.070
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43... 29 4.6
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 28 6.1
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 28 8.0
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 52.4 bits (120), Expect = 3e-07
Identities = 26/51 (50%), Positives = 31/51 (60%)
Frame = +1
Query: 526 ATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRGDYKY 678
AT AVL NA+YFKG W SKFD R TSD FY+ + P M G ++Y
Sbjct: 169 ATPAVLGNALYFKGDWESKFDARSTSDDVFYLPDGGHVSAPFM-SSGKWQY 218
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +2
Query: 311 GVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWVEENTNN 487
G +++ AN V+V +L +A V D + ++ + + F K A + IN+W E T
Sbjct: 96 GPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFESATAG 155
Query: 488 RIKDLV 505
RIKD +
Sbjct: 156 RIKDFL 161
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 48.8 bits (111), Expect = 4e-06
Identities = 20/42 (47%), Positives = 28/42 (66%)
Frame = +1
Query: 529 TAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 654
T VL NA+YFKGAW+ KFD T D +F++ K+++ P M
Sbjct: 242 TRLVLGNALYFKGAWTEKFDASKTKDGEFHLLDGKSVQAPFM 283
Score = 48.8 bits (111), Expect = 4e-06
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = +1
Query: 529 TAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKR 663
T VL NA+YFKGAW+ KFD T D +F++ ++++ P M R
Sbjct: 494 TKLVLANALYFKGAWAEKFDVSKTEDGEFHLLDGESVQAPFMSTR 538
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/51 (45%), Positives = 28/51 (54%)
Frame = +1
Query: 529 TAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRGDYKYG 681
TA VLVNAIYFKG WS+ F T+ F+ ++ VP M R D G
Sbjct: 165 TALVLVNAIYFKGKWSNPFPRSSTTTGKFHRLDGSSVDVPFMSSREDQYIG 215
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/42 (47%), Positives = 26/42 (61%)
Frame = +1
Query: 529 TAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 654
T VL NA+YFKGAW+ KFD T D +F + K++ P M
Sbjct: 34 TRLVLGNALYFKGAWTEKFDASKTKDGEFRLLDGKSVLAPFM 75
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 45.2 bits (102), Expect = 5e-05
Identities = 22/51 (43%), Positives = 27/51 (52%)
Frame = +1
Query: 529 TAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRGDYKYG 681
TA VLVNAIYFKG WS+ F T+ F+ ++ P M R D G
Sbjct: 153 TALVLVNAIYFKGKWSNPFPRERTTTGKFHRLDGSSVDAPFMSSREDQYIG 203
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 41.9 bits (94), Expect = 5e-04
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +1
Query: 529 TAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYK-RGDYKY 678
T V+ NAIYFKG W + FD+ T++R+F +++VP M + G Y +
Sbjct: 87 TRHVVGNAIYFKGEWLAPFDKSDTAEREFRRLDGSSVEVPFMQRPSGSYHH 137
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/51 (41%), Positives = 25/51 (49%)
Frame = +1
Query: 529 TAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRGDYKYG 681
T VLVNAIYFKG WS F T+ F+ ++ V M R D G
Sbjct: 115 TTLVLVNAIYFKGKWSDPFPRESTTTGKFHRLDGSSVNVRFMRSREDQYIG 165
>05_06_0044 - 25150322-25151260
Length = 312
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 526 ATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 654
+ + L N++YF W F LT + DF+VS D ++VP M
Sbjct: 75 SASVFLANSLYFNAYWDHPFFPHLTEEGDFHVSPDHDVRVPFM 117
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 338 VYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAKS-INDWVEENTNNRIKDLVNRT 514
V+V +L+ FA + VF + V++ + N AA++ IN+W T +KD+++ +
Sbjct: 3 VWVDASLRLNPAFADTAASVFKAAVRS---AGNPAAARAEINEWFSSQTGGFVKDILSNS 59
>11_01_0771 + 6453130-6454488
Length = 452
Score = 37.9 bits (84), Expect = 0.008
Identities = 17/30 (56%), Positives = 19/30 (63%)
Frame = +1
Query: 529 TAAVLVNAIYFKGAWSSKFDERLTSDRDFY 618
TA VL NAIYFKG W F+E T + FY
Sbjct: 202 TAVVLGNAIYFKGKWDRPFNESDTERKPFY 231
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 37.1 bits (82), Expect = 0.013
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +1
Query: 529 TAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 654
T VL +A+YF+G W + D R T+++ FY +++VP +
Sbjct: 171 TGLVLGSALYFRGRWLDRDDLRRTTEQKFYCLDGTSVEVPFV 212
>01_01_1152 + 9170628-9171899
Length = 423
Score = 36.3 bits (80), Expect = 0.023
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 526 ATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 654
+T VL NA++FKG WS F T F++ ++ P M
Sbjct: 187 STVVVLANAVHFKGTWSLPFHPSATFHAPFHLLDGGAVRAPFM 229
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 34.7 bits (76), Expect = 0.070
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 526 ATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 654
+T VL NA++FK W KF+ T R F+ + VP +
Sbjct: 147 STKCVLANAMHFKATWGRKFESYDTQRRRFHRQDGTRVTVPFL 189
>12_01_0053 -
438527-438670,439038-439247,439401-439530,439672-439842,
440233-440355,440439-440543,440656-441332,441498-441604,
441970-442177,442178-442245,444209-444411,444580-444663,
444780-445109,445238-445438,445667-445744,446236-446306
Length = 969
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 269 TEFASKSRDLRSIKGVELKMANKVYVHDG 355
T+ S S+D++ ++ VE + N VHDG
Sbjct: 520 TQIPSASKDIKEVRAVEEFLPNDFVVHDG 548
>08_01_0906 +
8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +2
Query: 257 DAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENF 376
+++ A+K+ ++ ++KG+E+ A K++ G LDE+F
Sbjct: 596 ESVANYCATKNNNVWNVKGLEVTGAIKLFDQRWGNLDEDF 635
>01_06_0823 +
32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +3
Query: 270 QNSRVKAVIFDQLKALSLKWRIKYTFMMVEN*TRILQSFPGTSSIRTSKTLISRRI 437
+N + K +FD+LKA LK +T + EN +L F + +K I R++
Sbjct: 679 KNKKDKDEVFDELKAAGLKRPCSFTDISSEN--ALLLEFETATDAAAAKAHIRRQL 732
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,033,509
Number of Sequences: 37544
Number of extensions: 328325
Number of successful extensions: 908
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -