Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0245
(690 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38975| Best HMM Match : Serpin (HMM E-Value=0) 50 1e-06
SB_55237| Best HMM Match : Serpin (HMM E-Value=0) 48 5e-06
SB_55238| Best HMM Match : Serpin (HMM E-Value=0) 46 4e-05
SB_26979| Best HMM Match : THF_DHG_CYH_C (HMM E-Value=0.017) 33 0.29
SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2) 31 0.88
SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41) 29 3.6
SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08) 29 4.7
SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20) 28 8.2
SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_30045| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
Length = 380
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/66 (31%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Frame = +2
Query: 311 GVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAK-SINDWVEENTNN 487
G ++ MAN+++ G ++ E F S++ F++++ +D+ KN+ A+ ++N WVE+ T +
Sbjct: 84 GNQILMANRLFAQMGFEILEEFKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKTKD 143
Query: 488 RIKDLV 505
+IK+L+
Sbjct: 144 KIKNLI 149
Score = 48.0 bits (109), Expect = 7e-06
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +1
Query: 529 TAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRGDYKYGESA 690
T LVNA+YFKG+W F+ T F + + I+V MY+ +++Y ES+
Sbjct: 158 TILCLVNAVYFKGSWMKHFNRNATQSGKFKTTPSQEIQVQFMYQSSEFRYLESS 211
>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
Length = 363
Score = 48.4 bits (110), Expect = 5e-06
Identities = 21/64 (32%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +2
Query: 317 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWVEENTNNRI 493
E+++ NK++ HD ++ E F +R+ ++S++ +DF +K A K +N WV + T I
Sbjct: 54 EIQLVNKIWGHDEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNI 113
Query: 494 KDLV 505
K+L+
Sbjct: 114 KELI 117
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +1
Query: 529 TAAVLVNAIYFKGAWSSKFDERLTSDRDFYV--SKDKTIKVPMMYKR 663
T ++VNA+YFKG W +F E T F+V S + I+V MM ++
Sbjct: 126 TRLIIVNAVYFKGVWKKEFGEENTFHAAFFVPESHESKIEVEMMTRK 172
>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
Length = 345
Score = 45.6 bits (103), Expect = 4e-05
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +1
Query: 529 TAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRGDYKY 678
T LVNAIYFKG W F + + +F + ++V MM+++ +KY
Sbjct: 121 TRLTLVNAIYFKGMWDKPFKKEHSHSSEFRTTSSNEVEVEMMFQKSKFKY 170
Score = 41.1 bits (92), Expect = 8e-04
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +2
Query: 317 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAA-KSINDWVEENTNNRI 493
E+ +AN +++ + + F + + +++D+ +D+ + A K +N WVEE T +I
Sbjct: 49 EMSIANNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKI 108
Query: 494 KDLV 505
DL+
Sbjct: 109 CDLI 112
>SB_26979| Best HMM Match : THF_DHG_CYH_C (HMM E-Value=0.017)
Length = 453
Score = 32.7 bits (71), Expect = 0.29
Identities = 19/65 (29%), Positives = 36/65 (55%)
Frame = +2
Query: 368 ENFAVVSRDVFNSDVQNIDFSKNTVAAKSINDWVEENTNNRIKDLVNRTRSAQPQRLFSS 547
E ++ D +D+ +I+ KN VAA S+ W + IKD++ +S+Q QR+F+
Sbjct: 104 EALRLLQTDRMMADM-SIELRKNNVAAISL--WPGPVSTEAIKDMLKSEKSSQMQRVFAD 160
Query: 548 TPSIS 562
+ ++
Sbjct: 161 SEDVT 165
>SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)
Length = 641
Score = 31.1 bits (67), Expect = 0.88
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +2
Query: 359 KLDENFAVVSRDVFNSDVQNIDFSKNTVAAKSINDW---VEENTNNRIKDLVNRTRSAQP 529
K +E+ + S +F+ + +N+DFS + ++ DW VE N ++D + + P
Sbjct: 460 KFEEDLRISS--MFSGEGENVDFSTDLYPTGNVEDWLLEVENTMRNSLRDTLRKALELYP 517
>SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)
Length = 257
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 369 RILQSFPGTSSIRTSKTLISRRIQSQLS 452
R+ SFPG S TL++R QSQ+S
Sbjct: 65 RLYDSFPGASRSEAESTLLARMRQSQVS 92
>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
Length = 595
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +3
Query: 45 AMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDG 212
+MAAV + +L+ + + + ++KNN +S+ AF+ L L L L+S+G
Sbjct: 36 SMAAVCRPAGLLEPDHFALPVAVESLILKNNSIRSIAKGAFNGLDKLLTLDLSSNG 91
>SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 640
Score = 28.7 bits (61), Expect = 4.7
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 53 CHCRDGDSKQTNDCL 9
CHCRDG+S Q N+ +
Sbjct: 336 CHCRDGESVQVNNAM 350
>SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)
Length = 672
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 210 HQKLKLTEREEAAPKMPRGQRFSL 139
HQ L + E + ++PK PR +F L
Sbjct: 56 HQNLSINEMDSSSPKRPRQHQFGL 79
>SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 345
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 210 HQKLKLTEREEAAPKMPRGQRFSL 139
HQ L + E + ++PK PR +F L
Sbjct: 21 HQNLSINEMDSSSPKRPRQHQFGL 44
>SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 210 HQKLKLTEREEAAPKMPRGQRFSL 139
HQ L + E + ++PK PR +F L
Sbjct: 50 HQNLSINEMDSSSPKRPRQHQFGL 73
>SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 210 HQKLKLTEREEAAPKMPRGQRFSL 139
HQ L + E + ++PK PR +F L
Sbjct: 21 HQNLSINEMDSSSPKRPRQHQFGL 44
>SB_30045| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 27.9 bits (59), Expect = 8.2
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 684 LSIFIIAAFIHHGYFDCF 631
LS++++ +HH YF CF
Sbjct: 298 LSLYVVVVTVHHHYFFCF 315
>SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 210 HQKLKLTEREEAAPKMPRGQRFSL 139
HQ L + E + ++PK PR +F L
Sbjct: 7 HQNLSINEMDSSSPKCPRQHQFGL 30
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,869,934
Number of Sequences: 59808
Number of extensions: 388879
Number of successful extensions: 1207
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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