Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0244
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    28   1.6  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.9  
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    27   2.9  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    25   8.7  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   8.7  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    25   8.7  

>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +3

Query: 105 DRCTAPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSAR-LERNTVRPPILSTRTVPPNR-- 275
           D     + LP+ + P    +   K+ ++F P+HH  + +  ++ +P   +T     N   
Sbjct: 148 DESVIDIPLPSEEYPFEDPKPREKKNKSFKPKHHKKQDINASSAQPKSTTTTEAAANTKD 207

Query: 276 VSNETM 293
           +  ETM
Sbjct: 208 IEEETM 213


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 23/78 (29%), Positives = 29/78 (37%)
 Frame = +3

Query: 219  ERNTVRPPILSTRTVPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQCQTRVKLNRV 398
            E NTV PP      VP     +  +    F R        + YT H  L+ Q  V   R 
Sbjct: 2046 EHNTVWPP-----WVPFETTFDFVLTPAAFSRFLHRVSFSVIYTKHNDLRLQETVHSTRA 2100

Query: 399  FFPR*FSQARSLGCGFAR 452
            FF    + A +L   F R
Sbjct: 2101 FFEDLDTHADTLTFDFPR 2118


>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -3

Query: 114 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIQMF 13
           Y+C  +  +S G L  SED ++ W    K GLI+ F
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQF 162


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 225 NTVRPPILSTRTVPPNRVSNETMKV 299
           +T+RP +L+T  + PN   +E M +
Sbjct: 317 DTIRPGLLNTEVIDPNANDDERMVI 341


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 522 GYLKRVIVTPAVYPRLLEFLHVDIQST 602
           G+++R+ V    YP LLE+L++ + S+
Sbjct: 76  GFIERISVILRDYPDLLEYLNIFLPSS 102


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/57 (22%), Positives = 28/57 (49%)
 Frame = +3

Query: 168 SFKRRRAFPPRHHSARLERNTVRPPILSTRTVPPNRVSNETMKVVVFQRRSRETISH 338
           SF    +F   + S     + V+P I+ + + P N   NE ++    + +++E ++H
Sbjct: 97  SFADNNSFDNVNSSKLTNPSPVQPNIVKSESEPANSKQNEVVEATSVE-KAKENVAH 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,067,373
Number of Sequences: 5004
Number of extensions: 60937
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)