Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0244
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-2|AAK29901.3|  976|Caenorhabditis elegans Hypothetical ...    33   0.16 
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    29   2.7  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    29   2.7  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    29   4.7  
AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical ...    28   8.1  

>AC025721-2|AAK29901.3|  976|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.10 protein.
          Length = 976

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 17/70 (24%), Positives = 32/70 (45%)
 Frame = +3

Query: 183 RAFPPRHHSARLERNTVRPPILSTRTVPPNRVSNETMKVVVFQRRSRETISHLCYTSHVS 362
           R F  RHH+  + +      ++  +  PP R++    ++   + R     SHLC+T H S
Sbjct: 572 RKFATRHHAMMMAQQQTNRVLICRQCKPPQRLTT-ARQIKEHRARHLPRKSHLCWTCHKS 630

Query: 363 LQCQTRVKLN 392
            +    + L+
Sbjct: 631 FRTAQLLSLH 640


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
           protein F29D11.1 protein.
          Length = 4753

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -3

Query: 690 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 559
           W+  G   C+ + K CDG + C       QCS+     +   AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
           receptor-related protein protein.
          Length = 4753

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -3

Query: 690 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 559
           W+  G   C+ + K CDG + C       QCS+     +   AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 307  FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 426
            F DD  K     ++   S  +   ESSSTGSS  +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 307  FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 426
            F DD  K     ++   S  +   ESSSTGSS  +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
 Frame = +3

Query: 120 PVKLPAWQCPRTGSRGSFKRRRAFPPRH----HSARLERNTVRPPILSTRTVPPNRVSNE 287
           P++ P+   PR     S ++R   PPR      S    R   R P+  +R+ P  +VS  
Sbjct: 83  PIRAPSASPPRRRRDDSPRKRSRSPPRRTRRSPSPPRRRRISRSPVRRSRSPPRRQVSRS 142

Query: 288 TMKVVVFQRRSR 323
                  Q+RSR
Sbjct: 143 RSPPPRRQQRSR 154


>AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical
           protein Y53C10A.4 protein.
          Length = 908

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +1

Query: 310 SDDRAKRSPTYATP----LMSPYNARLESSSTGSSFPAD-SPKP 426
           +DD   R P + +     L  PY +   SSS+ SS P+D +P+P
Sbjct: 681 NDDSDSRFPAFKSSSVAMLTEPYKSSSSSSSSTSSIPSDPAPRP 724


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,421,021
Number of Sequences: 27780
Number of extensions: 361961
Number of successful extensions: 1074
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)