Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0243
         (774 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.7  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   3.6  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   4.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.7  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   6.3  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    21   8.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.3  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 251 NFQGPQRVSGHRRKC 207
           NF GP R++   R+C
Sbjct: 601 NFHGPHRLAARSRRC 615


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 251 NFQGPQRVSGHRRKC 207
           NF GP R++   R+C
Sbjct: 493 NFHGPHRLAARSRRC 507


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 169 RIPWNSNAQAEKKTLPGPLG 110
           +IPW+ NA+A  K   G  G
Sbjct: 330 QIPWDKNAEALAKWANGQTG 349


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 270 PRTSLTEFSRSAESIRTPPQMRCSSRS 190
           P T L++     +   TPP + CS  S
Sbjct: 44  PETELSDSDCDLDVTGTPPPLDCSKNS 70


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 512 GPLY*NTNSLKRT*RTNIDQTRHRRIRFPSKPDT-PRSSEPI 390
           GPL  + +S KR+   ++ Q  +R+ R   KP   P+   PI
Sbjct: 240 GPLDLSVSSRKRSNDDSVSQPPNRKPRTDFKPQVLPQWPSPI 281


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -1

Query: 477 NITHEHRPDPAP-AHPLPVQTRHAPVLRANPYS 382
           N++HE         HPL + + H  +L  NP S
Sbjct: 321 NMSHEELSAMVNRCHPLSLSSDHQAMLHHNPMS 353


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 520 LYIFNMTLAKIVLRFGLDPDPRSP 591
           L +  + LA +V  F  DP  R+P
Sbjct: 444 LLVSKVALASVVKDFVFDPTERTP 467


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 463  TSTRPGTGASASRPNPT 413
            T+TRP T ++ +RP  T
Sbjct: 1061 TTTRPTTTSTTTRPTTT 1077


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,442
Number of Sequences: 336
Number of extensions: 4105
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)