Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0243
(774 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 29 0.74
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom... 27 2.3
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 27 3.0
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 27 3.0
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.9
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 26 5.2
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy... 26 6.9
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz... 26 6.9
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 6.9
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 26 6.9
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 26 6.9
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 9.1
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch... 25 9.1
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 9.1
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 29.1 bits (62), Expect = 0.74
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -3
Query: 613 ARKIRGRPENAGPDPVRNVRRFSRV 539
AR I GRPEN G ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238
>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 260
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -1
Query: 618 LRLGRSAEGRRTRVRIQSE-T*DDFRECHIKYIQFLRPIILKY*LAKTNITHE 463
+R G+S + R+ ++ D F +KY +F+RP+ L+ K N+TH+
Sbjct: 136 IRTGKSKKNSWKRMITKATFVGDGFTRRPVKYERFIRPMALRQ--KKANVTHK 186
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 158 PWNPIEGRYGSEREEHRICGGVRILSADLENSVRDVRGDVAP 283
P+ P+EG Y + ++ HRI R A LE +R V+ P
Sbjct: 3 PYEPVEGLYVNAKQYHRILKR-REARAKLEERLRGVQTTKKP 43
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 27.1 bits (57), Expect = 3.0
Identities = 18/81 (22%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Frame = -1
Query: 441 AHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALH-----LGDLLRIWVRTGA 277
+HP ++ R+ P+ N Y+ + + L + L + + +G ++ ++V +G+
Sbjct: 253 SHPFYMEQRYIPIGTTNTYTSASHGVLMLSSNGMEVLLRSTYIKYRMIGGIIDLFVYSGS 312
Query: 276 T-SPRTSLTEFSRSAESIRTP 217
T SP+ ++ ++ +SI TP
Sbjct: 313 TVSPKYTIQQY---VQSIGTP 330
>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 215
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 675 RSAQNWHGQRESDCLIKTKHCDGLAGVDA 761
R N G+ ++DCLI C + G+D+
Sbjct: 25 RGTLNSKGKNDNDCLIMCMRCRKVKGIDS 53
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 421 LDGKRMRRCRVWSMFVRYVRFSELVF*YNGPQKLYIFNMT 540
LDGK +RR R S + Y ++L + Y G Q++ + T
Sbjct: 258 LDGKYVRRERDHSQIIGYDDINQLFWSYKGLQEIMCADKT 297
>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 427
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 585 FSGLPRIFLAVSRVGFVSCAIGTFCTT 665
FSGL ++++ +SRV +S I F TT
Sbjct: 70 FSGLHKLWMILSRVPLISTFIPIFGTT 96
>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 451
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = +3
Query: 687 NWHGQRESDCLIKTKHCDG---LAGVDAS 764
N HG + +DC+I + +AG+DAS
Sbjct: 341 NTHGSKHTDCIITSSEAAANRFMAGIDAS 369
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 6.9
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -1
Query: 210 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 73
MR + E Y+ + G H T Q LF D + H L RRT
Sbjct: 1 MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.8 bits (54), Expect = 6.9
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -1
Query: 627 RHDLRLG-RSAEGRRTRVRIQSET*DDFRECHIKYIQFLRPIILKY*LAKTNITHE 463
+ D +LG + A + +V + S+ D +E H+KY+Q L+ LAK +I E
Sbjct: 1053 KEDTKLGEKCANIVQLQVDLLSKLADQEKEKHLKYLQSSYKNSLEVQLAKLDIVKE 1108
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 671 NGGRTECADRARNETDTTYG*EDPRKAGERGSGSSPKRK-TIFASVILNI 525
NGG + + + + G ++ G GSGSS RK T F++ + N+
Sbjct: 11 NGGTNQGMESSSANSPEMNGTQNSMSVGMSGSGSSQNRKITQFSNKLYNM 60
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 356 FPYLHYSID*RLFTLETCCGYGYEPARHL 270
+P+ S+D R+F LE+ GY EP L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187
>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
Mud1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 25.4 bits (53), Expect = 9.1
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = -3
Query: 451 PGTGASASRPNP---TRPGPQSQSLFRSYGSNLPTSL 350
P + ASAS PNP TR G + + GS+ P SL
Sbjct: 251 PASKASASSPNPQSGTRLGTKESVAPNNEGSSNPPSL 287
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 9.1
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = -1
Query: 387 YSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSPRTSLTEFSRSAESIRTPPQM 208
Y + + L +P+L RL A+HLG +I ++ +P +T ++ + TPP +
Sbjct: 1093 YKAKSSLLVTLKIPSLIPRLRAIHLGK-GKIVIK---KAPLKQITSKTKEKSTSPTPPSI 1148
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,321,326
Number of Sequences: 5004
Number of extensions: 72472
Number of successful extensions: 233
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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