Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0243
(774 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC009062-1|AAH09062.1| 198|Homo sapiens Unknown (protein for IM... 31 3.5
AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein. 31 3.5
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 31 3.5
AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein pro... 31 3.5
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 31 3.5
AK125693-1|BAC86247.1| 321|Homo sapiens protein ( Homo sapiens ... 31 4.6
BC132769-1|AAI32770.1| 828|Homo sapiens protocadherin gamma sub... 31 6.1
AF152516-1|AAD43776.1| 828|Homo sapiens protocadherin gamma A9 ... 31 6.1
AF152329-1|AAD43723.1| 932|Homo sapiens protocadherin gamma A9 ... 31 6.1
BC104763-1|AAI04764.1| 1070|Homo sapiens KIAA0355 protein. 30 8.0
BC104761-1|AAI04762.1| 1070|Homo sapiens KIAA0355 protein. 30 8.0
AB002353-1|BAA20812.2| 1082|Homo sapiens KIAA0355 protein. 30 8.0
>BC009062-1|AAH09062.1| 198|Homo sapiens Unknown (protein for
IMAGE:3875076) protein.
Length = 198
Score = 31.5 bits (68), Expect = 3.5
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Frame = -3
Query: 664 VVQNVPIAHETKPTRLTARKIR-GRPENAGPDPVRNVRRFSRVSY*IYTVFEAHYIKILT 488
V V + PT +R GRP P P + RR S S + + +
Sbjct: 16 VQPEVALKRVPSPTPAPKEAVREGRPPE--PTPAKRKRRSSSSSSSSSSSSSSSSSSSSS 73
Query: 487 R*NEHNARTSTRPGTGASASRPNPTRPGPQS 395
+ ++ +S+ + +S+S P+P +PGPQ+
Sbjct: 74 SSSSSSSSSSSSSSSSSSSSSPSPAKPGPQA 104
>AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein.
Length = 1791
Score = 31.5 bits (68), Expect = 3.5
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Frame = -3
Query: 664 VVQNVPIAHETKPTRLTARKIR-GRPENAGPDPVRNVRRFSRVSY*IYTVFEAHYIKILT 488
V V + PT +R GRP P P + RR S S + + +
Sbjct: 1602 VQPEVALKRVPSPTPAPKEAVREGRPPE--PTPAKRKRRSSSSSSSSSSSSSSSSSSSSS 1659
Query: 487 R*NEHNARTSTRPGTGASASRPNPTRPGPQS 395
+ ++ +S+ + +S+S P+P +PGPQ+
Sbjct: 1660 SSSSSSSSSSSSSSSSSSSSSPSPAKPGPQA 1690
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein protein.
Length = 2752
Score = 31.5 bits (68), Expect = 3.5
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Frame = -3
Query: 664 VVQNVPIAHETKPTRLTARKIR-GRPENAGPDPVRNVRRFSRVSY*IYTVFEAHYIKILT 488
V V + PT +R GRP P P + RR S S + + +
Sbjct: 2570 VQPEVALKRVPSPTPAPKEAVREGRPPE--PTPAKRKRRSSSSSSSSSSSSSSSSSSSSS 2627
Query: 487 R*NEHNARTSTRPGTGASASRPNPTRPGPQS 395
+ ++ +S+ + +S+S P+P +PGPQ+
Sbjct: 2628 SSSSSSSSSSSSSSSSSSSSSPSPAKPGPQA 2658
>AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein protein.
Length = 1275
Score = 31.5 bits (68), Expect = 3.5
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Frame = -3
Query: 664 VVQNVPIAHETKPTRLTARKIR-GRPENAGPDPVRNVRRFSRVSY*IYTVFEAHYIKILT 488
V V + PT +R GRP P P + RR S S + + +
Sbjct: 1093 VQPEVALKRVPSPTPAPKEAVREGRPPE--PTPAKRKRRSSSSSSSSSSSSSSSSSSSSS 1150
Query: 487 R*NEHNARTSTRPGTGASASRPNPTRPGPQS 395
+ ++ +S+ + +S+S P+P +PGPQ+
Sbjct: 1151 SSSSSSSSSSSSSSSSSSSSSPSPAKPGPQA 1181
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 31.5 bits (68), Expect = 3.5
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Frame = -3
Query: 664 VVQNVPIAHETKPTRLTARKIR-GRPENAGPDPVRNVRRFSRVSY*IYTVFEAHYIKILT 488
V V + PT +R GRP P P + RR S S + + +
Sbjct: 2618 VQPEVALKRVPSPTPAPKEAVREGRPPE--PTPAKRKRRSSSSSSSSSSSSSSSSSSSSS 2675
Query: 487 R*NEHNARTSTRPGTGASASRPNPTRPGPQS 395
+ ++ +S+ + +S+S P+P +PGPQ+
Sbjct: 2676 SSSSSSSSSSSSSSSSSSSSSPSPAKPGPQA 2706
>AK125693-1|BAC86247.1| 321|Homo sapiens protein ( Homo sapiens
cDNA FLJ43705 fis, clone TESOP2001818. ).
Length = 321
Score = 31.1 bits (67), Expect = 4.6
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 11 PIPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAER 118
P+P G+ T ++PS+L+ ++ G P W ED+ R
Sbjct: 228 PLPPKGTETFFCVLPSALRAALSCG-PSWGEDSGPR 262
>BC132769-1|AAI32770.1| 828|Homo sapiens protocadherin gamma
subfamily A, 9 protein.
Length = 828
Score = 30.7 bits (66), Expect = 6.1
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +3
Query: 603 IFLAVSRVGFVSCAIGTFCTTAVQRSAQNWHGQRESDCLIKTKHCDGLAGVDASDF 770
++L V+ V VSC TF T + ++WH S L++ DGLAGV S F
Sbjct: 691 LYLVVA-VAVVSCVFLTFVITLLALRLRHWH----SSHLLRAT-SDGLAGVPTSHF 740
>AF152516-1|AAD43776.1| 828|Homo sapiens protocadherin gamma A9
short form protein protein.
Length = 828
Score = 30.7 bits (66), Expect = 6.1
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +3
Query: 603 IFLAVSRVGFVSCAIGTFCTTAVQRSAQNWHGQRESDCLIKTKHCDGLAGVDASDF 770
++L V+ V VSC TF T + ++WH S L++ DGLAGV S F
Sbjct: 691 LYLVVA-VAVVSCVFLTFVITLLALRLRHWH----SSHLLRAT-SDGLAGVPTSHF 740
>AF152329-1|AAD43723.1| 932|Homo sapiens protocadherin gamma A9
protein.
Length = 932
Score = 30.7 bits (66), Expect = 6.1
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +3
Query: 603 IFLAVSRVGFVSCAIGTFCTTAVQRSAQNWHGQRESDCLIKTKHCDGLAGVDASDF 770
++L V+ V VSC TF T + ++WH S L++ DGLAGV S F
Sbjct: 691 LYLVVA-VAVVSCVFLTFVITLLALRLRHWH----SSHLLRAT-SDGLAGVPTSHF 740
>BC104763-1|AAI04764.1| 1070|Homo sapiens KIAA0355 protein.
Length = 1070
Score = 30.3 bits (65), Expect = 8.0
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 660 TTAVQRSAQNWHGQRESDCLIKTKHCDG-LAGVDASD-FC 773
T V+ + ++W G E+ ++ + CDG LAG++ FC
Sbjct: 220 TPEVEEAVRSWRGAAEATSRLRERGCDGCLAGIEVQQLFC 259
>BC104761-1|AAI04762.1| 1070|Homo sapiens KIAA0355 protein.
Length = 1070
Score = 30.3 bits (65), Expect = 8.0
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 660 TTAVQRSAQNWHGQRESDCLIKTKHCDG-LAGVDASD-FC 773
T V+ + ++W G E+ ++ + CDG LAG++ FC
Sbjct: 220 TPEVEEAVRSWRGAAEATSRLRERGCDGCLAGIEVQQLFC 259
>AB002353-1|BAA20812.2| 1082|Homo sapiens KIAA0355 protein.
Length = 1082
Score = 30.3 bits (65), Expect = 8.0
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 660 TTAVQRSAQNWHGQRESDCLIKTKHCDG-LAGVDASD-FC 773
T V+ + ++W G E+ ++ + CDG LAG++ FC
Sbjct: 232 TPEVEEAVRSWRGAAEATSRLRERGCDGCLAGIEVQQLFC 271
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,639,723
Number of Sequences: 237096
Number of extensions: 2829507
Number of successful extensions: 10297
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10285
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9367263024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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