Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0243
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   5.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   7.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   7.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.3  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 652 VPIAHETKPTRLTARKIRGRPENAGPDPVRNVRR 551
           VPI   TKP    AR  +G   N G + V  V++
Sbjct: 292 VPIDANTKPCTWAARPWQGYMTNNGVNNVEAVQK 325


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 652 VPIAHETKPTRLTARKIRGRPENAGPDPVRNVRR 551
           VPI   TKP    AR  +G   N G + V  V++
Sbjct: 292 VPIDANTKPCTWAARPWQGYMTNNGVNNVEAVQK 325


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 652 VPIAHETKPTRLTARKIRGRPENAGPDPVRNVRR 551
           VPI   TKP    AR  +G   N G + V  V++
Sbjct: 292 VPIDANTKPCTWAARPWQGYMTNNGVNNVEAVQK 325


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 123 PDLSAASSGHFGLPRRTLVFK 61
           PDL+  S G  GLP   L  +
Sbjct: 336 PDLAGTSQGSAGLPSAILAMR 356


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 192 SEPYLPSIGFHGTRTLRQKRKLFPDLSA 109
           SE   P+   HG R  RQ+ +   D  +
Sbjct: 472 SENNYPTTSIHGDRLQRQREEALADFKS 499


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 603 IFLAVSRVGFVSCAIGTFCTT 665
           +F+A+  V FVS  IG FC T
Sbjct: 417 LFIAI--VCFVSYLIGLFCIT 435


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 603 IFLAVSRVGFVSCAIGTFCTT 665
           +F+A+  V FVS  IG FC T
Sbjct: 470 LFIAI--VCFVSYLIGLFCIT 488


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = -1

Query: 303 LRIWVRTGATSPRTSLTEFSRSAESIRTP 217
           ++ W+  G T    +    S+  +++RTP
Sbjct: 513 IKEWIERGTTKSMEAANIMSKLPKTVRTP 541


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,961
Number of Sequences: 438
Number of extensions: 6093
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)