Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0243
(774 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05470.1 68416.m00599 formin homology 2 domain-containing pro... 29 2.6
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ... 29 4.5
At5g42370.1 68418.m05159 expressed protein 29 4.5
At5g22740.1 68418.m02656 glycosyl transferase family 2 protein s... 29 4.5
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic... 29 4.5
At5g24290.2 68418.m02858 integral membrane family protein contai... 28 6.0
At4g13410.1 68417.m02094 glycosyl transferase family 2 protein s... 28 6.0
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 6.0
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea... 28 6.0
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea... 28 6.0
At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family... 28 7.9
At1g21020.1 68414.m02630 hypothetical protein similar to At3g265... 28 7.9
>At3g05470.1 68416.m00599 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 884
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 594 LPRIFLAVSRVGFVSCAIGTFCTTAVQRSAQN 689
+P + S +GFV C +G FC A ++ N
Sbjct: 160 VPVVASTASAIGFVVCVVGVFCLCARRKRKMN 191
>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
Pfam profile PF00899: ThiF family
Length = 697
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -2
Query: 239 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 105
P ++G CG +V NH++LL +S+ L+ ++S +R +
Sbjct: 42 PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86
>At5g42370.1 68418.m05159 expressed protein
Length = 447
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 178 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 68
P Y + + Q+ +K +P PL + R L W TPS R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322
>At5g22740.1 68418.m02656 glycosyl transferase family 2 protein
similar to beta-(1-3)-glucosyl transferase GB:AAC62210
GI:3687658 from [Bradyrhizobium japonicum], cellulose
synthase from Agrobacterium tumeficiens [gi:710492] and
Agrobacterium radiobacter [gi:710493]; contains Pfam
glycosyl transferase, group 2 family protein domain
PF00535
Length = 534
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 507 WASKTVYI*YDTRENRLTFRTGS 575
WASK + I Y RENR+ ++ G+
Sbjct: 153 WASKGINIRYQIRENRVGYKAGA 175
>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
to low affinity calcium antiporter CAX2 (GI:1488267)
[Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 441
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +2
Query: 41 SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 172
S++ SL TS + PK P+++ S K +FC L++ +P+ P+
Sbjct: 41 SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86
>At5g24290.2 68418.m02858 integral membrane family protein contains
Pfam domain PF01988: Integral membrane protein
Length = 534
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = -1
Query: 522 QFLRPIILKY*LAKTNI-THEHRPDPAPAHPLPVQTRHAPVLRANPYSEVTDPI 364
+FL ++ Y K N+ E R A P PV T + N S+ DPI
Sbjct: 26 EFLVDLLESYRFGKDNVPAREFRSKAAATAPAPVNTTEIELEEDNDGSQAQDPI 79
>At4g13410.1 68417.m02094 glycosyl transferase family 2 protein
similar to beta-(1-3)-glucosyl transferase GB:AAC62210
GI:3687658 from [Bradyrhizobium japonicum], cellulose
synthase from Agrobacterium tumeficiens [gi:710492] and
Agrobacterium radiobacter [gi:710493]; contains Pfam
glycosyl transferase, group 2 family protein domain
PF00535
Length = 537
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 507 WASKTVYI*YDTRENRLTFRTGS 575
WASK + I Y+ RENR ++ G+
Sbjct: 167 WASKDININYERRENRNGYKAGA 189
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 234 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 136
+S + P R ++PYLPS G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247
>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 793
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -1
Query: 375 TDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSPRTSLTEFSRSAESI 226
T LPL L Y L + D RI +G T PR + T F + S+
Sbjct: 289 TSLAAELPLVPLPYLLLPSYSADDPRILYSSGTTGPRNAQTRFQSNQSSV 338
>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 790
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -1
Query: 375 TDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSPRTSLTEFSRSAESI 226
T LPL L Y L + D RI +G T PR + T F + S+
Sbjct: 289 TSLAAELPLVPLPYLLLPSYSADDPRILYSSGTTGPRNAQTRFQSNQSSV 338
>At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family
protein similar to Mrs16p (GI:2737884) [Saccharomyces
cerevisiae]; weak similarity to ataxin-2 related protein
(GI:1679686) [Homo sapiens]
Length = 595
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 472 NARTSTRPGTGASASRPNPTRPGPQSQS 389
+++T + G SASR + +RPGP + S
Sbjct: 419 SSKTKSESSFGQSASRSSESRPGPSTSS 446
>At1g21020.1 68414.m02630 hypothetical protein similar to At3g26530,
At1g08760, At1g08740, At2g29240, At1g35650
Length = 751
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = -3
Query: 418 PTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSS 317
PTRPG +S SL R G+N PT+ T + + SS
Sbjct: 499 PTRPGLRS-SLKRKRGNNGPTAATILTPAVDNSS 531
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,872,095
Number of Sequences: 28952
Number of extensions: 406258
Number of successful extensions: 1322
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1320
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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