Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0238
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    27   3.8  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    27   3.8  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    26   5.0  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   5.0  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    26   5.0  
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    26   5.0  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    26   6.6  
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    25   8.8  
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    25   8.8  

>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
 Frame = +2

Query: 512 IQPLIGSDRASS--------ERFQWYLVPDKNAATSEIFFYIY--NRKFNDPIEINLKEN 661
           I P IG  R S         ERF  +  P+  A  SE    +   +R +N PIEI + EN
Sbjct: 50  ISPFIGDGRGSDIFNYEYYDERFH-FCRPENIAKQSESLGSVLFGDRLYNSPIEIKMLEN 108

Query: 662 SNDEQQLFGELTRTDVNF 715
            +        +  +DV+F
Sbjct: 109 QDCVPLCASIIPSSDVSF 126


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1136

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 220  FSYRLWTTGSRESSPITFQYSSDYFTTTELSK*RTRNMVIQ 342
            FS+R      R+++ I ++  S Y +TTEL   + R  +I+
Sbjct: 1024 FSWRYKHQNYRDAAAIIYEKLSRYISTTELIGKKERTFIIE 1064


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 98  LYLAIMTTPHLLLNGYIQTTSANFKKLFR 184
           LYL+   T HL  +G I+    N+K LFR
Sbjct: 54  LYLSEFGTKHLRRHGRIEKKRRNWKGLFR 82


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 493 AKRMPRYSTTNRLGQSQQRKI 555
           A  MP Y ++NR  QSQ+R I
Sbjct: 322 ASNMPTYGSSNRTVQSQKRSI 342


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 662 SNDEQQLFGELTRTDVNFEHYGWN 733
           +NDE++++GE T   V ++ Y +N
Sbjct: 88  ANDEEEIWGEETNESVVYKEYTYN 111


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 61  ISAEYNKQLYDSVISGDYDHAASIAKRLHTNNVSELQETISK 186
           ++ E N++  D++   D D AAS+   L  +  +E  +T+SK
Sbjct: 256 VTKELNEEQLDALRKKDKDTAASVLAELFGSENTEEIDTVSK 297


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 577 VGHQIPLESFAAGSVRAY 524
           VG Q+PL S AA S+R Y
Sbjct: 250 VGEQLPLPSSAAASLRGY 267


>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +2

Query: 518 PLIGSDRASSERFQWYLVPDKNAATSEIFFYIYNRKFNDPIEINLKEN 661
           PLI +     +R+ W+     +       F+I N  F  PI  N+KE+
Sbjct: 52  PLIATKLEVPKRWFWHFYAFISLLNPLFTFFILNTNFPIPIFKNIKED 99


>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 617 NRKFNDPIEINLKENSNDEQQLFGELTRTDVNFEH 721
           N++  D IEIN K+    ++QL  +L+      EH
Sbjct: 315 NQELCDQIEINKKKLEFRKEQLLKQLSNAQEKLEH 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,658
Number of Sequences: 5004
Number of extensions: 63944
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)