Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0238
         (754 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41022| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.33 
SB_58346| Best HMM Match : HIG_1_N (HMM E-Value=5.8)                   31   1.3  
SB_47298| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_44953| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_35646| Best HMM Match : CMD (HMM E-Value=1.6e-13)                   29   4.1  
SB_18982| Best HMM Match : M (HMM E-Value=1.1e-06)                     29   5.4  
SB_59267| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      28   9.4  
SB_8252| Best HMM Match : rve (HMM E-Value=0.13)                       28   9.4  

>SB_41022| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 580

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 18/64 (28%), Positives = 34/64 (53%)
 Frame = +1

Query: 58  TISAEYNKQLYDSVISGDYDHAASIAKRLHTNNVSELQETISKLISDKIRNLVDFSYRLW 237
           T+  EYN +L D   S ++     I+ +L  + +SEL++ +   I + ++  V   YR++
Sbjct: 400 TVDQEYNPKLQDKT-SKEFKELQHISSKLLDDALSELEDYLRNEIIEFLKGSVVIRYRIY 458

Query: 238 TTGS 249
           T  S
Sbjct: 459 TRKS 462


>SB_58346| Best HMM Match : HIG_1_N (HMM E-Value=5.8)
          Length = 160

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 150 KQRQRTSRNYFEVDIRQNSQSRRFFVQTVDYRIER 254
           KQ QRT+R   E + R + ++R+  V T   R+ER
Sbjct: 66  KQTQRTTRKRHEANTRMHDETRKRHVTTQSNRVER 100


>SB_47298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/70 (21%), Positives = 34/70 (48%)
 Frame = +3

Query: 246 IERIITDNFPIQFRLFYNDRAIKITDAKYGYSIKLTPGQNKAIINISDNTNVRSSWVFKP 425
           ++ + T    +  + +Y  RA+  T  ++G+S++  P  +K+   +S + N     + + 
Sbjct: 161 LDHMYTSGVQLPVKAYYYKRAVSSTCDRFGHSLRQKP-PSKSSSELSIDANKEQRELIQT 219

Query: 426 LWESNKLYFK 455
           L   N+L  K
Sbjct: 220 LENKNRLLLK 229


>SB_44953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 415 YSSHCGRATSSTSKFGMRTPIPTLNSAKRMPRYSTTNRLGQSQQ 546
           YSS C R     ++FG    +P     K MP +    R G+SQ+
Sbjct: 23  YSSVCRRNMLDHNEFGNSQKLPCPRKRKIMPMHLWLRRFGRSQR 66


>SB_35646| Best HMM Match : CMD (HMM E-Value=1.6e-13)
          Length = 116

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +3

Query: 381 ISDNTNVRSSWVFKPLWESNKLYFKIWNADSNSYLEFGEKDAK 509
           + +  + RS    K L ++NK+  +I+N D+N+Y+E G  D K
Sbjct: 5   VKEFNDYRSKMNEKLLADNNKVIKRIFNVDTNAYME-GALDVK 46


>SB_18982| Best HMM Match : M (HMM E-Value=1.1e-06)
          Length = 825

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 586 GIFVGHQIPLESFAAGSVRAY*WLNTLASFSPNSR*ELESAF 461
           G++  HQI  ESF  G +R   WL+   SF  +SR   ++A+
Sbjct: 4   GLWKKHQIRRESFENGGIRE--WLSDSDSFDSSSRHVTDAAW 43


>SB_59267| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1444

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 115 DHAASIAKRLHTNNVSELQETISKLISDKIR 207
           +H     +RLH   VS+L + ISKL S+K R
Sbjct: 738 EHKLKEMQRLHGQEVSKLSKRISKLESEKRR 768


>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +2

Query: 428  VGEQQALLQNLECGLQFLP*IRRKGCQGIQPLIGSDRASSERFQWYLVPDKNAATS 595
            V +   ++  L     F+  + + G   +QPL G  RAS  R      PDK  ++S
Sbjct: 1433 VSDTSRIMLKLHFICSFVKYVAQFGAPPVQPLSGPQRASISRVTPRTTPDKPTSSS 1488


>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
          Length = 264

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 563 YLVPDKNAAT-SEIFFYIYNRKFNDPIEINLKENSNDEQQLFGE 691
           Y +P++ A T +E+    Y  +F  P+E++  +  N E Q+F E
Sbjct: 124 YPIPNQEAVTVAEVLVAHYISRFGVPLELHSDQGRNFELQVFLE 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,895,732
Number of Sequences: 59808
Number of extensions: 453827
Number of successful extensions: 1444
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1442
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)