Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0238
(754 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY653038-1|AAT74746.1| 251|Homo sapiens proteoglycan 4 protein. 32 1.9
BC112922-1|AAI12923.1| 218|Homo sapiens SCN1B protein protein. 31 5.9
U12193-1|AAB97608.1| 218|Homo sapiens voltage-gated sodium chan... 30 7.8
L16242-1|AAA61277.1| 218|Homo sapiens voltage-gated sodium chan... 30 7.8
L10338-1|AAA60391.1| 218|Homo sapiens sodium channel beta-1 sub... 30 7.8
DQ677665-1|ABQ01236.1| 218|Homo sapiens sodium channel beta-1 s... 30 7.8
BT019923-1|AAV38726.1| 218|Homo sapiens sodium channel, voltage... 30 7.8
BC067122-1|AAH67122.1| 218|Homo sapiens sodium channel, voltage... 30 7.8
BC021266-1|AAH21266.2| 186|Homo sapiens SCN1B protein protein. 30 7.8
>AY653038-1|AAT74746.1| 251|Homo sapiens proteoglycan 4 protein.
Length = 251
Score = 32.3 bits (70), Expect = 1.9
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = -3
Query: 587 RHFCRA--PNTTGIFRCWLCPSLLVVEYLGILFAEFKVGIGVR-IPNFEVELVALPQWLE 417
R F RA P+ T R P+ L + G+L E KVGI R +PN ++LP +
Sbjct: 155 RRFERAIGPSQTHTIRIQYSPARLAYQDKGVLHNEVKVGILWRGLPNVVTSAISLPNIRK 214
Query: 416 YPTAPHVSIIRDIYY 372
+ + +D YY
Sbjct: 215 PDGYDYYAFSKDQYY 229
>BC112922-1|AAI12923.1| 218|Homo sapiens SCN1B protein protein.
Length = 218
Score = 30.7 bits (66), Expect = 5.9
Identities = 11/58 (18%), Positives = 29/58 (50%)
Frame = +1
Query: 64 SAEYNKQLYDSVISGDYDHAASIAKRLHTNNVSELQETISKLISDKIRNLVDFSYRLW 237
S +Y +Y + +Y+H S+ K++H V + ++ ++S+ + ++ +W
Sbjct: 116 SGDYECHVYRLLFFDNYEHNTSVVKKIHLEVVDKANRDMASIVSEIMMYVLIVVLTIW 173
>U12193-1|AAB97608.1| 218|Homo sapiens voltage-gated sodium channel
beta-1 subunit protein.
Length = 218
Score = 30.3 bits (65), Expect = 7.8
Identities = 11/58 (18%), Positives = 29/58 (50%)
Frame = +1
Query: 64 SAEYNKQLYDSVISGDYDHAASIAKRLHTNNVSELQETISKLISDKIRNLVDFSYRLW 237
S +Y +Y + +Y+H S+ K++H V + ++ ++S+ + ++ +W
Sbjct: 116 SGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIW 173
>L16242-1|AAA61277.1| 218|Homo sapiens voltage-gated sodium channel
type I, beta subunit protein.
Length = 218
Score = 30.3 bits (65), Expect = 7.8
Identities = 11/58 (18%), Positives = 29/58 (50%)
Frame = +1
Query: 64 SAEYNKQLYDSVISGDYDHAASIAKRLHTNNVSELQETISKLISDKIRNLVDFSYRLW 237
S +Y +Y + +Y+H S+ K++H V + ++ ++S+ + ++ +W
Sbjct: 116 SGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIW 173
>L10338-1|AAA60391.1| 218|Homo sapiens sodium channel beta-1
subunit protein.
Length = 218
Score = 30.3 bits (65), Expect = 7.8
Identities = 11/58 (18%), Positives = 29/58 (50%)
Frame = +1
Query: 64 SAEYNKQLYDSVISGDYDHAASIAKRLHTNNVSELQETISKLISDKIRNLVDFSYRLW 237
S +Y +Y + +Y+H S+ K++H V + ++ ++S+ + ++ +W
Sbjct: 116 SGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIW 173
>DQ677665-1|ABQ01236.1| 218|Homo sapiens sodium channel beta-1
subunit precursor protein.
Length = 218
Score = 30.3 bits (65), Expect = 7.8
Identities = 11/58 (18%), Positives = 29/58 (50%)
Frame = +1
Query: 64 SAEYNKQLYDSVISGDYDHAASIAKRLHTNNVSELQETISKLISDKIRNLVDFSYRLW 237
S +Y +Y + +Y+H S+ K++H V + ++ ++S+ + ++ +W
Sbjct: 116 SGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIW 173
>BT019923-1|AAV38726.1| 218|Homo sapiens sodium channel,
voltage-gated, type I, beta protein.
Length = 218
Score = 30.3 bits (65), Expect = 7.8
Identities = 11/58 (18%), Positives = 29/58 (50%)
Frame = +1
Query: 64 SAEYNKQLYDSVISGDYDHAASIAKRLHTNNVSELQETISKLISDKIRNLVDFSYRLW 237
S +Y +Y + +Y+H S+ K++H V + ++ ++S+ + ++ +W
Sbjct: 116 SGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIW 173
>BC067122-1|AAH67122.1| 218|Homo sapiens sodium channel,
voltage-gated, type I, beta protein.
Length = 218
Score = 30.3 bits (65), Expect = 7.8
Identities = 11/58 (18%), Positives = 29/58 (50%)
Frame = +1
Query: 64 SAEYNKQLYDSVISGDYDHAASIAKRLHTNNVSELQETISKLISDKIRNLVDFSYRLW 237
S +Y +Y + +Y+H S+ K++H V + ++ ++S+ + ++ +W
Sbjct: 116 SGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIW 173
>BC021266-1|AAH21266.2| 186|Homo sapiens SCN1B protein protein.
Length = 186
Score = 30.3 bits (65), Expect = 7.8
Identities = 11/58 (18%), Positives = 29/58 (50%)
Frame = +1
Query: 64 SAEYNKQLYDSVISGDYDHAASIAKRLHTNNVSELQETISKLISDKIRNLVDFSYRLW 237
S +Y +Y + +Y+H S+ K++H V + ++ ++S+ + ++ +W
Sbjct: 84 SGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIW 141
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,727,495
Number of Sequences: 237096
Number of extensions: 1959774
Number of successful extensions: 7741
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7741
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9071127468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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