Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0238
         (754 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81042-7|CAE46660.1|  371|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z73976-9|CAA98280.2|  371|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z48795-5|CAA88729.1|  337|Caenorhabditis elegans Hypothetical pr...    29   3.5  

>Z81042-7|CAE46660.1|  371|Caenorhabditis elegans Hypothetical
           protein T07C12.11 protein.
          Length = 371

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -1

Query: 754 FGL*GLEIPTVVFKIDIGSR*FSEKLLLIIAVLF 653
           F +  +EI  V++KI+ G   +SE +L+I  VLF
Sbjct: 302 FAMARVEISKVLYKIEFGDNQYSEPVLIIKCVLF 335


>Z73976-9|CAA98280.2|  371|Caenorhabditis elegans Hypothetical
           protein T07C12.11 protein.
          Length = 371

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -1

Query: 754 FGL*GLEIPTVVFKIDIGSR*FSEKLLLIIAVLF 653
           F +  +EI  V++KI+ G   +SE +L+I  VLF
Sbjct: 302 FAMARVEISKVLYKIEFGDNQYSEPVLIIKCVLF 335


>Z48795-5|CAA88729.1|  337|Caenorhabditis elegans Hypothetical
           protein R05H5.6 protein.
          Length = 337

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 569 PNTTGIFRCWLCPSLLVVEYLGILFAEFKVGI 474
           P+T+G    WLC SLL +  + ++F  F V I
Sbjct: 174 PDTSGYKMNWLCYSLLAINSVNLVFNYFLVKI 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,580,468
Number of Sequences: 27780
Number of extensions: 347266
Number of successful extensions: 1045
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)