Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0238
         (754 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53640.1 68418.m06663 F-box family protein contains F-box dom...    31   0.82 
At4g03200.1 68417.m00437 expressed protein contains Pfam PF03190...    29   2.5  
At1g35680.1 68414.m04436 50S ribosomal protein L21, chloroplast ...    29   3.3  
At4g23310.1 68417.m03359 receptor-like protein kinase, putative ...    29   4.4  
At4g23280.1 68417.m03355 protein kinase, putative similar to rec...    29   4.4  
At1g53080.1 68414.m06010 legume lectin family protein                  29   4.4  
At4g23270.1 68417.m03354 protein kinase family protein contains ...    28   5.8  
At2g37420.1 68415.m04589 kinesin motor protein-related                 28   5.8  
At1g08760.1 68414.m00975 expressed protein similar to At1g21030,...    28   5.8  
At4g04460.1 68417.m00648 aspartyl protease family protein contai...    28   7.7  

>At5g53640.1 68418.m06663 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 917

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 390 NTNVRSSWVFKPLWESNKLYFKIWNADSNSYLEFGEK 500
           +T  RS W++ P  E N LYF     D N+++ FG+K
Sbjct: 520 STRWRSLWLWLPCLELNSLYF----PDFNAFVSFGDK 552


>At4g03200.1 68417.m00437 expressed protein contains Pfam PF03190:
           Protein of unknown function, DUF255
          Length = 818

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 402 RSSWVFKPLWESNKLYFKIWNADSNSYLEFGEKDA 506
           R+S + K   ES K YF + N+    Y+E  EK A
Sbjct: 533 RASKILKAEPESTKYYFPVVNSQPEDYIEVAEKAA 567


>At1g35680.1 68414.m04436 50S ribosomal protein L21, chloroplast /
           CL21 (RPL21) identical to 50S ribosomal protein L21,
           chloroplast precursor (CL21) [Arabidopsis thaliana]
           SWISS-PROT:P51412
          Length = 220

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -3

Query: 491 EFKVGIGVRIPNFEVELVALPQWLEYPTAPHVSI 390
           +++  IG R PN  + +  +  + EYP +P+V++
Sbjct: 182 KYRRNIGHRQPNTRIRITGITGYEEYPASPNVAV 215


>At4g23310.1 68417.m03359 receptor-like protein kinase, putative
           similar to receptor-like protein kinase 4 (gi:13506745),
           5 (gi:13506747), and 6 (gi:13506749) from Arabidopsis
           thaliana; contains Pfam protein kinase domain PF00069
          Length = 830

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +1

Query: 157 VSELQETISKLISDKIRNLVDFSYRLWTTGSR 252
           +S ++ +    + D + NLV +++RLW+ GS+
Sbjct: 704 ISGMKNSSLYQMDDSVSNLVTYTWRLWSNGSQ 735


>At4g23280.1 68417.m03355 protein kinase, putative similar to
           receptor-like protein kinase 4 (gi:13506745), 5
           (gi:13506747), and 6 (gi:13506749) from Arabidopsis
           thaliana; contains Pfam protein kinase domain PF00069
          Length = 656

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +1

Query: 157 VSELQETISKLISDKIRNLVDFSYRLWTTGSRESSPITFQYSSDYFTTTELSK 315
           VS ++ +    +   I NLV +++RLW+ GS   S +      D + T+E+++
Sbjct: 530 VSGMKNSSLDQMDGSISNLVTYTWRLWSNGS--PSELVDPSFGDNYQTSEITR 580


>At1g53080.1 68414.m06010 legume lectin family protein
          Length = 283

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +3

Query: 270 FPIQFRLFYNDRAIKITDAKYGYSIKLTPGQ--NKAIINISDNTNVRSSWVFKPLWESNK 443
           F ++F +F + R   I D   G +I     +   KA   I   T  ++ W+FK +  S+ 
Sbjct: 150 FAVEFDVFQDKRFGDINDNHVGVNINSVNSKVSEKAGYWIQTRTRGKNQWLFKEVKLSSG 209

Query: 444 LYFKIWNADSNS 479
             +K W    NS
Sbjct: 210 DNYKAWIEYKNS 221


>At4g23270.1 68417.m03354 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 645

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/53 (24%), Positives = 30/53 (56%)
 Frame = +1

Query: 157 VSELQETISKLISDKIRNLVDFSYRLWTTGSRESSPITFQYSSDYFTTTELSK 315
           +S ++ +    + + + NLV +++RLW+ GS   S +      D + T+E+++
Sbjct: 522 ISGMKNSSLYQMDESVGNLVTYTWRLWSNGS--PSELVDPSFGDNYQTSEITR 572


>At2g37420.1 68415.m04589 kinesin motor protein-related 
          Length = 1039

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/23 (65%), Positives = 20/23 (86%)
 Frame = +3

Query: 633 ILSRLTSKRTAMMSNSFSEN*RE 701
           ILS+LTSK+TAM+S++ S N RE
Sbjct: 774 ILSKLTSKKTAMISDA-SSNIRE 795


>At1g08760.1 68414.m00975 expressed protein similar to At1g21030,
           At5g44890, At2g29240, At1g08740; similar to EST
           gb|N96641
          Length = 748

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +2

Query: 428 VGEQQALLQNLECGLQFLP*IRRKGCQGIQPLIGSDRASSERFQWYLVPDKNA 586
           VG++  +++N   G++F     RK  +G   + GSDR  S   +  L PD  +
Sbjct: 275 VGKKLPMIKNFVQGIEFGAKALRKSWEGNLDIRGSDRTKSSLPRRDLTPDSRS 327


>At4g04460.1 68417.m00648 aspartyl protease family protein contains
           Pfam profiles: PF00026 eukaryotic aspartyl protease,
           PF03489 surfactant protein B, PF05184 saposin-like type
           B, region 1
          Length = 508

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = +2

Query: 560 WYLVPDKNAATSEIFFYIYNRKFNDPIEINLKENSNDEQQLFGELTRTDVNFEHYGWNFE 739
           WY + +K      IF +  NR   DP    +     D +   GE T   V  + Y W F+
Sbjct: 211 WYNMVEKGLVKEPIFSFWLNRNPKDPEGGEIVFGGVDPKHFKGEHTFVPVTHKGY-WQFD 269


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,329,749
Number of Sequences: 28952
Number of extensions: 313665
Number of successful extensions: 919
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)