Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0237
         (721 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2AGK8 Cluster: Beta-lactamase-like; n=1; Halothermothr...    34   4.1  
UniRef50_Q384X1 Cluster: Putative uncharacterized protein; n=1; ...    34   4.1  
UniRef50_Q4RL15 Cluster: Chromosome 1 SCAF15025, whole genome sh...    33   9.4  

>UniRef50_Q2AGK8 Cluster: Beta-lactamase-like; n=1; Halothermothrix
           orenii H 168|Rep: Beta-lactamase-like - Halothermothrix
           orenii H 168
          Length = 406

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +3

Query: 576 LDPISKDFEIVNMNFEDLKCF*DNSQIKKYDVKNHYYVLM 695
           + P  KD  I+N N +DLK    + + KKYD  N+Y V++
Sbjct: 140 ITPAKKDLVIINNNKKDLKAVIISPEDKKYDKINNYSVVL 179


>UniRef50_Q384X1 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 150

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 20/70 (28%), Positives = 29/70 (41%)
 Frame = -3

Query: 272 PPKRLDDFDEICCAYPVSMRIGQHLFFIPLNVRGSPPLNFFFLIFRQKFCILFFYDTAYK 93
           PP  L +F       P         F  PL   G PP +F F+I+    C  FF+   + 
Sbjct: 83  PPTLLSEFLLFLFFPPFPFPFFSFFFLFPLQCGGFPPSSFHFVIYCISTCSFFFF---FS 139

Query: 92  NTYNPKFVPL 63
            +++P   PL
Sbjct: 140 LSHSPPSFPL 149


>UniRef50_Q4RL15 Cluster: Chromosome 1 SCAF15025, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 1 SCAF15025, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 178

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -3

Query: 245 EICCAYPVSMRIGQHLFFIPLNVRGSPPLN 156
           EICCA+P  + + Q  F  PL   GSP LN
Sbjct: 20  EICCAHPRPLLLYQSFFSSPLFSPGSPQLN 49


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 607,640,764
Number of Sequences: 1657284
Number of extensions: 11296109
Number of successful extensions: 22963
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22955
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)