Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0237
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    26   6.2  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    25   8.2  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    25   8.2  

>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = -3

Query: 683 VMIFNIIFFYLTIVLKTFQIFKIHVDYFKIFTNWVKI*GCHDRNHRISTNTVHKHRPLFY 504
           + +F +I   LTI+L    IF   VD+F +  +W  +   + R H ++T  +  H  + +
Sbjct: 24  IPLFTVIVALLTIILGIVNIFLPIVDFFGL--SWHNL--INIRLHTLNTYPLVHHGVISF 79

Query: 503 IV 498
           I+
Sbjct: 80  IL 81


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 657 LFDYCLKNISNLQNSC*LFQNLY 589
           +F +C KNISN  N   L   LY
Sbjct: 218 IFTFCFKNISNPPNLLKLLTKLY 240


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 577 RSEDVMTAIIEYLPIQSTSIDH-YSILCLTRNL 482
           ++ DV+T + +YL + S S  H YS+    R+L
Sbjct: 353 KNTDVLTCLFDYLFLSSISPSHRYSVAFFLRSL 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,706,435
Number of Sequences: 5004
Number of extensions: 53312
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)