Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0237
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284...    30   2.1  
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336...    29   4.9  
04_04_0047 + 22346962-22347437,22347874-22348036,22348143-223482...    28   8.6  

>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
            27829243-27829449,27829611-27829704,27829806-27829870,
            27829946-27830398,27830467-27830760,27830837-27831295,
            27831367-27831588,27831755-27831968,27832039-27832494,
            27833280-27833389,27833468-27833644,27833758-27833979,
            27834048-27834167,27834274-27834383,27834552-27834607,
            27835252-27835440,27835602-27835775,27836066-27836281,
            27837066-27837106,27837971-27837986,27838330-27838415,
            27838737-27838910,27839093-27839149,27839720-27840064,
            27840175-27840216,27840377-27840496,27840575-27840724,
            27840830-27841534,27841609-27841954,27842978-27843080,
            27844817-27844860,27845905-27846101,27846322-27846344,
            27846802-27847122,27847406-27847579,27847843-27848047,
            27848817-27848880,27850097-27850278,27850291-27850350,
            27850688-27850748,27851249-27851313,27851491-27851569,
            27851656-27852021,27852442-27852790,27852887-27852989,
            27853103-27853373,27854296-27854405,27854515-27854652
          Length = 3364

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 589  LIGSRSEDVMTAIIEYLPIQSTSIDHYSILCLTRNLK 479
            L+   +EDV+  ++  L   STS+ HY ++ L + LK
Sbjct: 1408 LLSMLNEDVVILVLNILQKSSTSLQHYGLVVLQQLLK 1444


>02_01_0471 -
           3364215-3364912,3365511-3365742,3365827-3366198,
           3366324-3366449,3367056-3367262,3367399-3367492,
           3367575-3367621,3367705-3368157,3368261-3368560,
           3368656-3369114,3369189-3369410,3369659-3369890,
           3370051-3370422,3371210-3371322,3371682-3371903,
           3371977-3372180,3372308-3372572,3373123-3373311,
           3373441-3373768,3373843-3374248,3374339-3374648,
           3375677-3375837,3376825-3376998,3377265-3377609,
           3377713-3377754,3378585-3378734,3378847-3379002,
           3379088-3379540,3379651-3379966,3380402-3380839,
           3381475-3381697,3383538-3383852,3384033-3384095,
           3384699-3384903,3385362-3385425,3386014-3386204
          Length = 3048

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 580 SRSEDVMTAIIEYLPIQSTSIDHYSILCLTRNLK 479
           S++EDV+   +  L   ST++ HY ++ L + LK
Sbjct: 857 SKNEDVIILFLNVLQKSSTALQHYGLVVLQQLLK 890


>04_04_0047 +
           22346962-22347437,22347874-22348036,22348143-22348217,
           22348302-22348402,22348488-22348603,22348693-22348904,
           22349033-22349124,22349319-22349433,22349654-22349757,
           22349881-22349926,22350007-22350071,22350192-22350272,
           22350356-22350410,22350623-22350711,22350802-22350889,
           22351011-22351091
          Length = 652

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 598 KSLLIGSRSEDVMTAIIEYLPIQSTSIDHYSILCLTRNLKVYPN 467
           KSL IGSRS+   +     LP+   S +H +I C  +   V  N
Sbjct: 544 KSLSIGSRSDPSNSTASLALPLPQISENHATITCKNKAFYVTDN 587


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,094,525
Number of Sequences: 37544
Number of extensions: 265398
Number of successful extensions: 455
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)