Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0237
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26689| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_40209| Best HMM Match : Ank (HMM E-Value=0)                         30   2.2  
SB_20222| Best HMM Match : SSF (HMM E-Value=0.0045)                    30   2.2  
SB_52960| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_26689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1176

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -3

Query: 683 VMIFNIIFFYLTIVLKTFQIFKIHVDYFKIFTNWVKI 573
           + I  I+F  +  + + +QIF I +DYFK  TN V++
Sbjct: 837 ITIVLILFATIEFLKEFYQIFMIRLDYFKDITNLVEL 873


>SB_40209| Best HMM Match : Ank (HMM E-Value=0)
          Length = 885

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -3

Query: 683 VMIFNIIFFYLTIVLKTFQIFKIHVDYFKIFTNWVKI 573
           + I  I+F  +  + +  QIF I +DYFK  TN V++
Sbjct: 653 IAIVLILFATIEFLKEFHQIFMIRLDYFKDITNLVEL 689


>SB_20222| Best HMM Match : SSF (HMM E-Value=0.0045)
          Length = 471

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -3

Query: 158 NFFFLIFRQKF-CILFFYDTAYKNTY 84
           N + +IFRQK  C++FF+DT   NTY
Sbjct: 338 NIYKMIFRQKLCCVIFFHDT---NTY 360


>SB_52960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 549 MIAVMTSSDLDPISKDFEIVNMNFEDLK 632
           ++ +++S D   IS+DF++ +  F DLK
Sbjct: 571 LVEILSSVDTQCISRDFDVFDFPFSDLK 598


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,506,204
Number of Sequences: 59808
Number of extensions: 336209
Number of successful extensions: 720
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)