Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0237
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82265-7|CAB05171.2|  425|Caenorhabditis elegans Hypothetical pr...    31   0.63 
U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical p...    31   1.1  
Z81486-11|CAB03994.1| 1150|Caenorhabditis elegans Hypothetical p...    28   7.7  
Z78015-6|CAB01437.1| 1150|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z82265-7|CAB05171.2|  425|Caenorhabditis elegans Hypothetical
           protein F02H6.4 protein.
          Length = 425

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = -2

Query: 69  TPLRSTLIFYLLIKNFKIFC 10
           T +R+T IFY+++KN K+FC
Sbjct: 354 TQIRTTCIFYVILKNNKLFC 373


>U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical
           protein F20D6.12 protein.
          Length = 513

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = -3

Query: 281 CHTPPKRLDDFDEICC-AYPVSMRIGQHLFFIPLNVRGSPPLNFFFLIF---RQKFCILF 114
           CH    RL D   +CC   PV++    H F + + ++ +   N FFLIF       CI  
Sbjct: 322 CHFETWRLFDPYYLCCFCIPVTI----HYFLLIIVIKNAKKANGFFLIFYYMGTSDCIYC 377

Query: 113 FYDTAYKNTYNPKFVPLY 60
               + + T+N + +P++
Sbjct: 378 LTIISSEFTHNTQLLPIF 395


>Z81486-11|CAB03994.1| 1150|Caenorhabditis elegans Hypothetical
           protein C53A5.2 protein.
          Length = 1150

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 665 IFFYLTIVLKTFQIFKIHVDYFKIFTNWVKI 573
           IF+Y T +LK F   K++ D  +++ N  K+
Sbjct: 428 IFYYKTYILKWFTTAKLYSDLIQLYDNPEKV 458


>Z78015-6|CAB01437.1| 1150|Caenorhabditis elegans Hypothetical
           protein C53A5.2 protein.
          Length = 1150

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 665 IFFYLTIVLKTFQIFKIHVDYFKIFTNWVKI 573
           IF+Y T +LK F   K++ D  +++ N  K+
Sbjct: 428 IFYYKTYILKWFTTAKLYSDLIQLYDNPEKV 458


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,615,984
Number of Sequences: 27780
Number of extensions: 289655
Number of successful extensions: 623
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)