Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0237
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   2.9  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   6.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   6.7  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   8.9  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   8.9  

>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 472 PNLCSEI*AIINFNQNWERRLSNYSLNFNRNW 377
           P + S   ++ N N N+    +NY+ N+N N+
Sbjct: 79  PKIISNNNSLSN-NYNYNNNYNNYNNNYNTNY 109



 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -1

Query: 439 NFNQNWERRLSNYSLNFNR 383
           N+N N+    +NY+ N+ +
Sbjct: 93  NYNNNYNNYNNNYNTNYKK 111


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 185 LNVRGSPPLNFFFLIFRQ 132
           L++  S PL++ FLIF Q
Sbjct: 171 LDLISSIPLDYIFLIFNQ 188


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 185 LNVRGSPPLNFFFLIFRQ 132
           L++  S PL++ FLIF Q
Sbjct: 171 LDLISSIPLDYIFLIFNQ 188


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 185 LNVRGSPPLNFFFLIFRQ 132
           L++  S PL++ FLIF Q
Sbjct: 171 LDLISSIPLDYIFLIFNQ 188


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 142 IKKKKFRGGLPLTFRGMKN 198
           I  K+   GLP TFR  KN
Sbjct: 505 IGPKEDERGLPFTFREQKN 523


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -1

Query: 439 NFNQNWERRLSNYSLNFNR 383
           N+N N+++   NY +N  +
Sbjct: 108 NYNNNYKKLYKNYIINIEQ 126


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -1

Query: 439 NFNQNWERRLSNYSLNFNR 383
           N+N N+++   NY +N  +
Sbjct: 108 NYNNNYKKLYKNYIINIEQ 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,772
Number of Sequences: 438
Number of extensions: 3706
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)