Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0237
         (721 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34060.1 68417.m04833 expressed protein similar to DEMETER pr...    29   4.1  
At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family...    28   5.4  
At5g36030.1 68418.m04340 Ulp1 protease family protein contains P...    27   9.5  
At4g31900.1 68417.m04533 chromatin remodeling factor, putative s...    27   9.5  

>At4g34060.1 68417.m04833 expressed protein similar to DEMETER
           protein [Arabidopsis thaliana] GI:21743571; expression
           supported by MPSS
          Length = 1073

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 102 SIQKYIQP*ICTPLRSTL--IFYLLIKNFKIFCKK 4
           SIQKY+ P +C   + TL  + Y +I   K+FC K
Sbjct: 675 SIQKYLWPRLCKLPQETLYELHYQMITFGKVFCTK 709


>At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family
            protein (ROS1) similar to DEMETER protein [Arabidopsis
            thaliana] GI:21743571; contains Pfam profile PF00730:
            HhH-GPD superfamily base excision DNA repair protein
          Length = 1393

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 102  SIQKYIQP*ICTPLRSTL--IFYLLIKNFKIFCKK 4
            SIQKY+ P +C   + TL  + Y +I   K+FC K
Sbjct: 1006 SIQKYLWPRLCKLDQKTLYELHYQMITFGKVFCTK 1040


>At5g36030.1 68418.m04340 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; simlar to At4g19310, At5g36030
          Length = 355

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 589 LIGSRSEDVMTAIIEYLPIQSTSIDH 512
           ++G+R+E V   +I YLP+Q  + +H
Sbjct: 50  IVGTRNELVPIGLILYLPVQDNNSEH 75


>At4g31900.1 68417.m04533 chromatin remodeling factor, putative strong
            similarity to chromatin remodeling factor CHD3 (PICKLE)
            [Arabidopsis thaliana] GI:6478518; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain
          Length = 1202

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = +3

Query: 480  FRLRVRHNIE*WSMLVDCIGRYSMIAVMTSSDLDPISKDFEIVNMNFEDLKCF*DNSQIK 659
            +R R R N E    L++  GRY M+     ++ D   + F+       D K F +   +K
Sbjct: 863  YRKRARDNSE-EIPLMEGEGRYLMVLGFNETERDIFLRTFKRYGAGNFDWKEFVNPLYMK 921

Query: 660  KYDVKNHYYVL 692
             YD  N Y +L
Sbjct: 922  TYDEINKYGIL 932


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,179,940
Number of Sequences: 28952
Number of extensions: 248294
Number of successful extensions: 463
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)