Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0236
(818 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0929 + 21633179-21633377,21633466-21633809,21633905-21634297 31 0.83
06_01_0350 + 2534422-2535615 31 1.5
01_06_0090 + 26358051-26359157,26359582-26359701,26359968-263600... 31 1.5
12_02_0407 - 18654134-18654172,18654913-18655803 30 2.5
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 3.4
01_06_0254 + 27915608-27915755,27915837-27916042,27917069-27917305 29 3.4
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 29 3.4
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 29 4.4
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 29 4.4
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 5.9
11_08_0032 - 27807489-27807497,27807641-27807684,27808046-278081... 28 7.8
07_03_0078 - 13147741-13148913 28 7.8
>10_08_0929 + 21633179-21633377,21633466-21633809,21633905-21634297
Length = 311
Score = 31.5 bits (68), Expect = 0.83
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = -3
Query: 471 NARTSTRPGTGASASRPNPTRPGP 400
+A T+TR +GA+ +RP PTRP P
Sbjct: 279 SAATTTRNNSGAAPARPVPTRPWP 302
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 162 PWNSNAQAEKKTLPGPLGGVFRP 94
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>01_06_0090 +
26358051-26359157,26359582-26359701,26359968-26360099,
26360194-26360375,26360488-26360602,26362001-26362135,
26362261-26362395
Length = 641
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 474 HNARTSTRPGTGASASRPNPTRPGPQSQSLFRSYGSNLPTS 352
H RT PG G+S+ P P ++ S RS G + P S
Sbjct: 15 HVGRTPETPGRGSSSGSPAPGGSASKAVSFARSLGVHFPRS 55
>12_02_0407 - 18654134-18654172,18654913-18655803
Length = 309
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 19 EPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRY 183
E G+G ++++ PS+ +T P+ P R + CLS ++PI GRY
Sbjct: 115 EEGTGRLTLVNPSTGETLAVPPPPRLPPKRRHRRAPLVVSCLS--FGYHPITGRY 167
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 437 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 348
H L + RH P L+A P S + C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>01_06_0254 + 27915608-27915755,27915837-27916042,27917069-27917305
Length = 196
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -3
Query: 435 SASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTNR 280
SAS P+P +P P S SL R+ S +Y G W A + R
Sbjct: 15 SASLPSPAQPAPASLSL-RAVSPRARLSASYAAFPIGGIGAWAAATPASSGR 65
>01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -3
Query: 729 WF*LDSRIPLVRASSELTVERRSYRIVPIAHE 634
WF L SR +V+A + T E +SY+ +P+ ++
Sbjct: 2301 WFSLFSREQVVKAMMKTTKEVQSYKFIPLVYQ 2332
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 437 HPLPVQTRHAPVLRANP 387
H +PVQ H+PVL+ NP
Sbjct: 340 HSVPVQKNHSPVLKTNP 356
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 29.1 bits (62), Expect = 4.4
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = -1
Query: 260 SLPEFSRSA--ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFG 87
S E SR++ + I+ P M S + + GFHG L+ KL PDL + HF
Sbjct: 175 SKQESSRASPMKLIKLYPHM--SGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWLMEHFN 231
Query: 86 LPRRTLVFKDEGTI 45
LVF G I
Sbjct: 232 PATNQLVFPGRGAI 245
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 431 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 318
+P Q + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>11_08_0032 -
27807489-27807497,27807641-27807684,27808046-27808168,
27810770-27810983,27811382-27811530,27811719-27812618,
27812964-27814659
Length = 1044
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 459 STRPGTGASASRPNPTRPGPQSQSLFRSY 373
+TRPG A+ N T GPQ +FR +
Sbjct: 904 TTRPGKKLMATTANRTSKGPQDNRVFREH 932
>07_03_0078 - 13147741-13148913
Length = 390
Score = 28.3 bits (60), Expect = 7.8
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 572 SGPAFSGLPRIFLAVSRVGFVSCAI 646
SGP + G R+F+A+S +G ++ ++
Sbjct: 223 SGPIYKGRERVFIAISDIGMLAVSL 247
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,774,235
Number of Sequences: 37544
Number of extensions: 590287
Number of successful extensions: 2193
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2190
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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