Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0236
         (818 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein.             32   2.9  
BC106949-1|AAI06950.1|  600|Homo sapiens RSHL3 protein protein.        31   3.8  
AL132795-2|CAI20497.1|  716|Homo sapiens protein ( ial spokehead...    31   3.8  
AL132795-1|CAI20496.1|  469|Homo sapiens protein ( Human DNA seq...    31   3.8  
BC009062-1|AAH09062.1|  198|Homo sapiens Unknown (protein for IM...    31   5.0  
AK125693-1|BAC86247.1|  321|Homo sapiens protein ( Homo sapiens ...    31   5.0  
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro...    31   5.0  
AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein pro...    31   5.0  
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.     31   5.0  

>AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein.
          Length = 1791

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 3/136 (2%)
 Frame = -3

Query: 651  VPIAHETKPTRLTARKIR-GRPENAGPDPVRNVRRFSRVSY*IYTVFEAHYIKILTR*NE 475
            V +     PT      +R GRP    P P +  RR S  S    +   +      +  + 
Sbjct: 1606 VALKRVPSPTPAPKEAVREGRPPE--PTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSS 1663

Query: 474  HNARTSTRPGTGASASRPNPTRPGPQSQSLFRSYGSNLP--TSLTYIILSTRGSSPWRPA 301
             ++ +S+   + +S+S P+P +PGPQ+     S     P   SL  +  S R S    P 
Sbjct: 1664 SSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERSLLPVSPSPRHS---LPH 1720

Query: 300  ADMGTNRRDISTYIPP 253
               GT  +  S Y PP
Sbjct: 1721 VARGTFLKRTSGYFPP 1736


>BC106949-1|AAI06950.1|  600|Homo sapiens RSHL3 protein protein.
          Length = 600

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -1

Query: 314 LGDLLRIWVRTGATSPRTSLPEFSRSAESIRTPPQMRCSSRSEPYLP 174
           LG+  R W    A SP+ S PE S   E+ + P   R S  S P+ P
Sbjct: 17  LGETRRPWEGKTAASPQYSEPESSEPLEAKQGPETGRQSRSSRPWSP 63


>AL132795-2|CAI20497.1|  716|Homo sapiens protein ( ial
           spokehead-like 1, a novel  ).).
          Length = 716

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -1

Query: 314 LGDLLRIWVRTGATSPRTSLPEFSRSAESIRTPPQMRCSSRSEPYLP 174
           LG+  R W    A SP+ S PE S   E+ + P   R S  S P+ P
Sbjct: 17  LGETRRPWEGKTAASPQYSEPESSEPLEAKQGPETGRQSRSSRPWSP 63


>AL132795-1|CAI20496.1|  469|Homo sapiens protein ( Human DNA
           sequence from clone RP3-412I7 on chromosome 6q22.1-22.33
            Contains a gene similar to murine radial spokehead-like
           1, a novel  ).
          Length = 469

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -1

Query: 314 LGDLLRIWVRTGATSPRTSLPEFSRSAESIRTPPQMRCSSRSEPYLP 174
           LG+  R W    A SP+ S PE S   E+ + P   R S  S P+ P
Sbjct: 17  LGETRRPWEGKTAASPQYSEPESSEPLEAKQGPETGRQSRSSRPWSP 63


>BC009062-1|AAH09062.1|  198|Homo sapiens Unknown (protein for
           IMAGE:3875076) protein.
          Length = 198

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
 Frame = -3

Query: 651 VPIAHETKPTRLTARKIR-GRPENAGPDPVRNVRRFSRVSY*IYTVFEAHYIKILTR*NE 475
           V +     PT      +R GRP    P P +  RR S  S    +   +      +  + 
Sbjct: 20  VALKRVPSPTPAPKEAVREGRPPE--PTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSS 77

Query: 474 HNARTSTRPGTGASASRPNPTRPGPQS 394
            ++ +S+   + +S+S P+P +PGPQ+
Sbjct: 78  SSSSSSSSSSSSSSSSSPSPAKPGPQA 104


>AK125693-1|BAC86247.1|  321|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43705 fis, clone TESOP2001818. ).
          Length = 321

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 10  PIPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAER 117
           P+P  G+ T   ++PS+L+ ++  G P W ED+  R
Sbjct: 228 PLPPKGTETFFCVLPSALRAALSCG-PSWGEDSGPR 262


>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein protein.
          Length = 2752

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
 Frame = -3

Query: 651  VPIAHETKPTRLTARKIR-GRPENAGPDPVRNVRRFSRVSY*IYTVFEAHYIKILTR*NE 475
            V +     PT      +R GRP    P P +  RR S  S    +   +      +  + 
Sbjct: 2574 VALKRVPSPTPAPKEAVREGRPPE--PTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSS 2631

Query: 474  HNARTSTRPGTGASASRPNPTRPGPQS 394
             ++ +S+   + +S+S P+P +PGPQ+
Sbjct: 2632 SSSSSSSSSSSSSSSSSPSPAKPGPQA 2658


>AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein protein.
          Length = 1275

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
 Frame = -3

Query: 651  VPIAHETKPTRLTARKIR-GRPENAGPDPVRNVRRFSRVSY*IYTVFEAHYIKILTR*NE 475
            V +     PT      +R GRP    P P +  RR S  S    +   +      +  + 
Sbjct: 1097 VALKRVPSPTPAPKEAVREGRPPE--PTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSS 1154

Query: 474  HNARTSTRPGTGASASRPNPTRPGPQS 394
             ++ +S+   + +S+S P+P +PGPQ+
Sbjct: 1155 SSSSSSSSSSSSSSSSSPSPAKPGPQA 1181


>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
          Length = 2800

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
 Frame = -3

Query: 651  VPIAHETKPTRLTARKIR-GRPENAGPDPVRNVRRFSRVSY*IYTVFEAHYIKILTR*NE 475
            V +     PT      +R GRP    P P +  RR S  S    +   +      +  + 
Sbjct: 2622 VALKRVPSPTPAPKEAVREGRPPE--PTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSS 2679

Query: 474  HNARTSTRPGTGASASRPNPTRPGPQS 394
             ++ +S+   + +S+S P+P +PGPQ+
Sbjct: 2680 SSSSSSSSSSSSSSSSSPSPAKPGPQA 2706


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,407,427
Number of Sequences: 237096
Number of extensions: 3109431
Number of successful extensions: 10326
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10318
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10203625794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)