Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0236
         (818 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ...    29   4.9  
At5g42370.1 68418.m05159 expressed protein                             29   4.9  
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic...    29   4.9  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   6.5  
At5g24290.2 68418.m02858 integral membrane family protein contai...    28   8.6  
At3g20780.1 68416.m02628 topoisomerase 6 subunit B (TOP6B) nearl...    28   8.6  
At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family...    28   8.6  
At1g21020.1 68414.m02630 hypothetical protein similar to At3g265...    28   8.6  

>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
           autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
           Pfam profile PF00899: ThiF family
          Length = 697

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -2

Query: 238 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 104
           P  ++G    CG  +V NH++LL +S+ L+      ++S  +R +
Sbjct: 42  PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86


>At5g42370.1 68418.m05159 expressed protein
          Length = 447

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 177 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 67
           P Y +  +   Q+ +K +P PL  + R L W TPS  R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322


>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
           to low affinity calcium antiporter CAX2 (GI:1488267)
           [Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 441

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +1

Query: 40  SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 171
           S++   SL TS  +  PK P+++   S K  +FC  L++ +P+ P+
Sbjct: 41  SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 233 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 135
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


>At5g24290.2 68418.m02858 integral membrane family protein contains
           Pfam domain PF01988: Integral membrane protein
          Length = 534

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -1

Query: 521 QFLRRIILKY*LAKTNI-THEHRPDPAPAHPLPVQTRHAPVLRANPYSEVTDPI 363
           +FL  ++  Y   K N+   E R   A   P PV T    +   N  S+  DPI
Sbjct: 26  EFLVDLLESYRFGKDNVPAREFRSKAAATAPAPVNTTEIELEEDNDGSQAQDPI 79


>At3g20780.1 68416.m02628 topoisomerase 6 subunit B (TOP6B) nearly
           identical to topoisomerase 6 subunit B [Arabidopsis
           thaliana] GI:12331188
          Length = 670

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 527 YIQFLRRIILKY*LAKTNITHEHRPDPAPAHPLPVQTRHAP 405
           Y QFL R I +       I    R D  P  P+P++T+H P
Sbjct: 284 YAQFLFRFISETPEKNVTIKFTRRTDVMP--PIPIETKHHP 322


>At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family
           protein similar to Mrs16p (GI:2737884) [Saccharomyces
           cerevisiae]; weak similarity to ataxin-2 related protein
           (GI:1679686) [Homo sapiens]
          Length = 595

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 471 NARTSTRPGTGASASRPNPTRPGPQSQS 388
           +++T +    G SASR + +RPGP + S
Sbjct: 419 SSKTKSESSFGQSASRSSESRPGPSTSS 446


>At1g21020.1 68414.m02630 hypothetical protein similar to At3g26530,
           At1g08760, At1g08740, At2g29240, At1g35650
          Length = 751

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -3

Query: 417 PTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSS 316
           PTRPG +S SL R  G+N PT+ T +  +   SS
Sbjct: 499 PTRPGLRS-SLKRKRGNNGPTAATILTPAVDNSS 531


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,117,481
Number of Sequences: 28952
Number of extensions: 436241
Number of successful extensions: 1406
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1403
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)