Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0235
         (804 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7K3E8 Cluster: Putative uncharacterized protein; n=1; ...    36   1.2  
UniRef50_Q97FF6 Cluster: Signal peptidase type IV; n=1; Clostrid...    35   2.1  
UniRef50_A1ZJI9 Cluster: Two component regulator three Y motif f...    33   8.4  
UniRef50_Q1RPZ7 Cluster: Zinc finger protein; n=1; Ciona intesti...    33   8.4  
UniRef50_A2EP63 Cluster: Putative uncharacterized protein; n=1; ...    33   8.4  

>UniRef50_A7K3E8 Cluster: Putative uncharacterized protein; n=1;
           Vibrio sp. Ex25|Rep: Putative uncharacterized protein -
           Vibrio sp. Ex25
          Length = 339

 Score = 35.9 bits (79), Expect = 1.2
 Identities = 22/71 (30%), Positives = 36/71 (50%)
 Frame = +3

Query: 258 TYSGPWFIIRILLKEVIQSCVAPRKRVFLSFSCVFRQIKSSDFSTQYRFGDFLWNLF*NR 437
           T SG  FIIR   +  ++S +    R++   S ++     + FS +Y F  +L+  F   
Sbjct: 249 TLSG-LFIIRFFCRPEMKSLLKDMLRIYSVLSMIYFMFGFAAFSNRYAFFSWLFIPFLQT 307

Query: 438 FLCSEINIISN 470
            L S +N+ISN
Sbjct: 308 ALMSSVNVISN 318


>UniRef50_Q97FF6 Cluster: Signal peptidase type IV; n=1; Clostridium
           acetobutylicum|Rep: Signal peptidase type IV -
           Clostridium acetobutylicum
          Length = 254

 Score = 35.1 bits (77), Expect = 2.1
 Identities = 25/70 (35%), Positives = 36/70 (51%)
 Frame = -1

Query: 312 FELLPLVKYV**TRVRCRYCSELVPKRKFLVKRKSFTTLRFLFRTLANTFDLVT*HNRD* 133
           ++LLPL+ YV   + RCRYC E +  R F    +  + + FL   L   + L+T      
Sbjct: 46  YDLLPLISYVI-IKGRCRYCKEKISYRYFAF--EFLSGIMFLAIYLKYGYQLIT---LKF 99

Query: 132 IFYFSFYFVI 103
           I  FSF F+I
Sbjct: 100 IVLFSFLFII 109


>UniRef50_A1ZJI9 Cluster: Two component regulator three Y motif
           family; n=1; Microscilla marina ATCC 23134|Rep: Two
           component regulator three Y motif family - Microscilla
           marina ATCC 23134
          Length = 1196

 Score = 33.1 bits (72), Expect = 8.4
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 185 KRNRSVVKLFLFT-RNFRFGTSSEQYLQRTLVHYTYFTKGSNSK 313
           K+ +++VK+F F   NFRF  S+  Y Q   + Y+Y+ +  + K
Sbjct: 689 KQPKNLVKVFPFKFNNFRFAFSTPYYTQSETIQYSYYLENFDQK 732


>UniRef50_Q1RPZ7 Cluster: Zinc finger protein; n=1; Ciona
           intestinalis|Rep: Zinc finger protein - Ciona
           intestinalis (Transparent sea squirt)
          Length = 1251

 Score = 33.1 bits (72), Expect = 8.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 276 TRVRCRYCSELVPKRKFLVKRKSFTTLRFLFRTLAN 169
           T+++CR CS+L P    L K + F   + L+R  AN
Sbjct: 312 TQIKCRSCSQLFPNSSSLNKHRRFCESKALYRGSAN 347


>UniRef50_A2EP63 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 115

 Score = 33.1 bits (72), Expect = 8.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 264 CRYCSELVPKRKFLVKRKSFTTLRFLFRTLANTFD 160
           C YC+E +P+ K+L   ++    + LF  ++N FD
Sbjct: 81  CLYCNEQIPQSKYLSHLRTHNDQKVLFDAISNLFD 115


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 723,248,620
Number of Sequences: 1657284
Number of extensions: 13713852
Number of successful extensions: 30530
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 29463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30496
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69143070360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)