Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0235
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    28   1.8  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.1  
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    26   5.5  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   7.2  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    26   7.2  
SPBC11G11.04 |trs20||TRAPP complex subunit Trs20 |Schizosaccharo...    25   9.5  

>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 206 KLFLFTRNFRFGTSSEQYLQRTLVHYTYFTKGSNSKLRGSQKE 334
           K    T++FRFG S  +Y      ++    KG N KL+G Q +
Sbjct: 536 KQLCLTKSFRFGNSVAKY-----ANFLLSLKGENVKLKGVQND 573


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = -1

Query: 687 SRCTEKLRLRRHVSKWVTHFLCWVGT--IGSVVTT*HRAGYELMQTSKQ*TKIYSLDIKV 514
           SR   KL LR     W+T+FL    T  I   +T     G+ L+QT       ++L +  
Sbjct: 147 SRIRRKLDLRIITCLWITYFLSRSVTYSISLSLTMNKHQGHSLLQTVSG-LNYHTLSVGT 205

Query: 513 QICII-CIVFDLYNDYLI 463
            +  +  I+FDL ++ L+
Sbjct: 206 GLSYVSLIIFDLPSNLLM 223


>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 455 DFRTKEPVSK*IPQEISESILCREIRRLNLSK 360
           +F  +E V   +PQ   + +L RE++ L+LS+
Sbjct: 334 EFYVQENVKAPVPQSKKQRVLKREVKSLDLSR 365


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +1

Query: 331 REFSSHFPASFDRLSRL-ISRHSIDSEIS 414
           R FSSH P + D+ S L ++ HS+ + IS
Sbjct: 580 RHFSSHTPVNVDKSSYLEMNGHSLSTVIS 608


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 149 HVTKSKVFANVLKRNRSVVKLFLFTRNFRFGTSS 250
           H   +  +  ++KR    V+ F+ TR+F  GTS+
Sbjct: 559 HKCINGTYNGLIKRGEGAVRPFILTRSFFAGTSA 592


>SPBC11G11.04 |trs20||TRAPP complex subunit Trs20
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 511 LHFNIQAIYFCLLL*RLHELIACPVLSGHYRPNGP 615
           LH N  A    L    LHEL    ++S  Y+PN P
Sbjct: 84  LHQNQSADNIKLFFQELHELYIKTLMSPFYQPNQP 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,146,488
Number of Sequences: 5004
Number of extensions: 63589
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)