Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0235
         (804 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0034 + 20064750-20065001,20065542-20065730,20066313-200665...    29   4.3  
05_07_0098 + 27672298-27672561,27672617-27672705,27673111-276731...    28   10.0 

>03_05_0034 +
           20064750-20065001,20065542-20065730,20066313-20066511,
           20069479-20069885
          Length = 348

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/69 (24%), Positives = 34/69 (49%)
 Frame = +1

Query: 331 REFSSHFPASFDRLSRLISRHSIDSEISCGIYFETGSFVLKST*YQIVVIKIKNYTNNTN 510
           +E  ++ P SFD + RLI+R +        +   +G+  L +T    +  +++N+T + N
Sbjct: 179 KEAVTYLPDSFDGIRRLITRFASKGLSLKDLAVLSGAHALGNTHCPSIAKRLRNFTAHHN 238

Query: 511 LHFNIQAIY 537
               + A Y
Sbjct: 239 TDPTLDATY 247


>05_07_0098 +
           27672298-27672561,27672617-27672705,27673111-27673159,
           27673217-27673304,27673891-27674020,27674790-27675366
          Length = 398

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = -1

Query: 684 RCTEKLRLRRHVSKWVTHFLCWVGTIGSVVTT*HRAGYELMQTS 553
           RCT    LR    +W  H  CW       VT      ++L+ T+
Sbjct: 301 RCTGTTVLRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATA 344


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,324,833
Number of Sequences: 37544
Number of extensions: 341975
Number of successful extensions: 659
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)