Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0235
         (804 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr...    28   9.0  
U53339-5|AAA96201.1|  342|Caenorhabditis elegans Serpentine rece...    28   9.0  

>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical
           protein F36H2.3 protein.
          Length = 1388

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/39 (41%), Positives = 17/39 (43%)
 Frame = +2

Query: 278 HYTYFTKGSNSKLRGSQKESFPLIFLRLSTD*VV*FLDT 394
           HY Y        L G +KE FPL F    T  VV F  T
Sbjct: 150 HYAYTFNDVGQSLPGYEKEFFPLCFAWRQTPSVVLFNST 188


>U53339-5|AAA96201.1|  342|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 16 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +1

Query: 397 IDSEISCGIYFETGSFVLKST*YQIVVIKIKNYTNNTNLHFNIQAIYFCLLL 552
           + S I+C ++    + V       +  IKI++Y +NT+    +  ++FC++L
Sbjct: 104 VHSSIACCLFCGMLTQVFMVIERLLATIKIESYEHNTSFWHILAYLFFCIVL 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,205,843
Number of Sequences: 27780
Number of extensions: 348653
Number of successful extensions: 799
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)