Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0235
         (804 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43110.1 68418.m05263 pumilio/Puf RNA-binding domain-containi...    30   1.6  
At2g03410.1 68415.m00299 Mo25 family protein similar to MO25 pro...    30   1.6  
At1g64780.1 68414.m07345 ammonium transporter 1, member 2 (AMT1....    29   2.7  
At4g28550.1 68417.m04084 RabGAP/TBC domain-containing protein si...    28   8.3  
At1g13090.1 68414.m01518 cytochrome P450 71B28, putative (CYP71B...    28   8.3  

>At5g43110.1 68418.m05263 pumilio/Puf RNA-binding domain-containing
           protein contains similarity to RNA-binding protein
          Length = 518

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +2

Query: 488 KTIQIIQICTL-ISKLYIFVYCFDVCMSS*PARC*VVTTDPMVPTQHKKCVTHFETCLLS 664
           + + +++   L +SK    ++    C    P  C ++  + +V   H+  +     CLL 
Sbjct: 310 RIVDVVRTVALQLSKSNHAIFVILACFRLFPLHCRLLL-ELIVQNCHQIAIDQHGCCLLQ 368

Query: 665 LSFSVQRLPHRSIRNALLL 721
           L F+  R+P+  IR  L++
Sbjct: 369 LCFNKDRVPNLEIRQRLIM 387


>At2g03410.1 68415.m00299 Mo25 family protein similar to MO25
           protein (early mouse development protein family) [Mouse]
           SWISS-PROT:Q06138
          Length = 348

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/54 (35%), Positives = 31/54 (57%)
 Frame = +2

Query: 161 SKVFANVLKRNRSVVKLFLFTRNFRFGTSSEQYLQRTLVHYTYFTKGSNSKLRG 322
           SK+F  +L R++S V  +L  +N+ +  +  +Y  + L   +YFTK   SKL G
Sbjct: 190 SKIFRELLTRHKSTVAEYL-AKNYEWFFA--EYNTKLLEKGSYFTKRQASKLLG 240


>At1g64780.1 68414.m07345 ammonium transporter 1, member 2 (AMT1.2)
           nearly identical to SP|Q9ZPJ8 Ammonium transporter 1,
           member 2 (AtAMT1;2) {Arabidopsis thaliana}
          Length = 514

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +2

Query: 155 TKSKVFANVLKRNRSVVKLFLFTRNFRFGTSSEQYLQRTLVHYTYFTKGSNSKLRGSQKE 334
           T + +  NVL      +  +LF   F FGT S  ++ R   H+++F   S  +  GS   
Sbjct: 83  TMNIMLTNVLDAAAGAISYYLFGFAFAFGTPSNGFIGR---HHSFFALSSYPERPGSDFS 139

Query: 335 SF 340
            F
Sbjct: 140 FF 141


>At4g28550.1 68417.m04084 RabGAP/TBC domain-containing protein
           similar to SP|P09379 GTPase-activating protein GYP7
           (Fragment) {Yarrowia lipolytica}; contains Pfam profile
           PF00566: TBC domain
          Length = 424

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +1

Query: 61  ERNFYSNNKH*QKQYYEIKTKIKNLVPIV 147
           ERN   N  H ++QYY  K + KN+VP+V
Sbjct: 95  ERNKLRN--HRREQYYAWKEECKNMVPLV 121


>At1g13090.1 68414.m01518 cytochrome P450 71B28, putative (CYP71B28)
           Identical to Cytochrome P450 (SP:Q9SAE3) [Arabidopsis
           thaliana]; strong similarity to gb|X97864 cytochrome
           P450 from Arabidopsis thaliana and is a member of the
           PF|00067 Cytochrome P450 family. ESTs gb|N65665,
           gb|T14112, gb|T76255, gb|T20906 and gb|AI100027 come
           from this gene
          Length = 490

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 424 KFHKKSPNRYCVEKSDDLICRKTQENERKTLF 329
           ++ ++  N  CV+K  DL  R++  N  KTLF
Sbjct: 141 RYIREEENDLCVKKLSDLASRRSLVNLEKTLF 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,729,995
Number of Sequences: 28952
Number of extensions: 307078
Number of successful extensions: 681
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)