Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0233
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    28   0.59 
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    28   0.78 
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    28   0.78 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   1.0  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   3.1  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    26   3.1  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   3.1  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    26   3.1  
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    25   4.2  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   7.3  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    25   7.3  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    25   7.3  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    24   9.6  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    24   9.6  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    24   9.6  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    24   9.6  

>SPCC1235.05c |fft2||fun thirty related protein
            Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 28.3 bits (60), Expect = 0.59
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = +1

Query: 82   DYINNKMGSNSSKPTDTSLVLKTELELGNSDPRSPTP-EITRT--PLQGKNGAKHNITKN 252
            D ++ +   N++KP  T      E ++ +S+    T  E T T  PL+G        T  
Sbjct: 1088 DMLDEENNGNNTKPEITGNESDGEFKVSSSNNSKQTDAEETNTGVPLEGSQPNSVEKTDL 1147

Query: 253  MTSERRLNLQTEMKN 297
               + + N++TEMK+
Sbjct: 1148 ADGDEKANIKTEMKS 1162


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 27.9 bits (59), Expect = 0.78
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +1

Query: 136 LVLKTELELGNSDPRSPTPEITRTPLQGKNGAKHNITKNMTSERRLNLQTE 288
           L+  TEL+  N  P S      R+P +   G  +N+T  ++S+R++N+  E
Sbjct: 55  LISMTELQQKNVPPSS------RSPRRRVAGVTNNVTARISSKRKINMVDE 99


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 27.9 bits (59), Expect = 0.78
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 282 NGDEKLIHNNPILSAVIKNHLQSYD 356
           N  +K IH NP+LS V   + +S+D
Sbjct: 808 NNSQKDIHRNPLLSHVFDTNTKSFD 832


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
 Frame = +1

Query: 94  NKMGSNSSKPTDTSLVL---KTELELGNSDPRSPTPEITRTPLQGKNGAKHNITKNMTSE 264
           N + S SSKPTDT+  +    T  E  ++   SPT   + TP+   + +  N +  +TS 
Sbjct: 342 NTIISRSSKPTDTTNSISFANTTPENTSTQITSPTAVNSSTPI--TSSSVLNSSTPITSS 399

Query: 265 RRLNLQTEMKN*YTITPFYLLL*KTIYNHMIPDLQLKILN 384
             LN  T + +   +     +   +I N   P     +LN
Sbjct: 400 SILNTSTPITSSSVLNSSTPITSSSILNSSTPITSSTVLN 439


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 70   SSLLDYINNKMGSNSSKPTDTSLVLKTE-LELGNSDPRSPTPEITRTPLQG 219
            SS L    N   S+ + P    L L T  L L +S PRS TP  T + L+G
Sbjct: 1322 SSTLQVPFNASSSSLATPKKEPLRLDTNSLTLTSSMPRSFTPSYTPSFLEG 1372


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 264 KTFESTNGDEKLIHNNPILSAVIKNHLQSYDPRSPTQDFERTPII 398
           K +     D  LI+   ++ AV+KN L +Y   +PT   + + I+
Sbjct: 546 KLWGMVRNDTVLINRANLMLAVLKNSLNTYIYMTPTTSVQPSQIL 590


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1337

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +1

Query: 334  KTIYNHMIPDLQLKILN 384
            + ++NH+ PD+Q K+LN
Sbjct: 1116 RPVHNHIDPDIQSKVLN 1132


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 97  KMGSNSSKPTDTSLVLKTELEL 162
           K  SN S+PT TS  LKT+  L
Sbjct: 532 KATSNKSRPTTTSTELKTDARL 553


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 393 WEFVQNLELEIGDHM 349
           W+F  N +L IGDH+
Sbjct: 140 WDFTPNKDLRIGDHV 154


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 49   NYTSYF*SSLLDYINNKMGSNSSKPTDTSLVLKTEL 156
            N  + F SS+LD+++ K   N+  P D  L +  ++
Sbjct: 1432 NADNLFQSSVLDHVHFKSVVNNEVPADERLAISDDI 1467


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = +3

Query: 249 KYDLRKTFESTNGDEKLIHNNPILSAVIK---NHLQSYD 356
           K  L  TF++ N D  L+H N  L  + K   NH+   D
Sbjct: 65  KLSLNPTFQALNMDLGLLHENITLDRIPKVPENHVSLID 103


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +3

Query: 288 DEKLIHNNPILSAVIKN--HLQSYDPRSPTQDFERTPIIISSKINDLTMTLKFRLIS 452
           +E+L  N  +L A ++   HL  Y  RS T  F   PI++S  I  L     F ++S
Sbjct: 228 NEQLDSNFTLLDAYLEPLVHLHEYSRRSNTLFFFYLPIVMSILIFCLPTQALFIVLS 284


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/16 (62%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
 Frame = -1

Query: 370 VGDRGS-YDCKWFFIT 326
           V D+G  Y CKW FIT
Sbjct: 209 VNDKGEFYYCKWHFIT 224


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
 Frame = +1

Query: 46  YNYTSYF*SSLLDYINNKMGSNSSKPTDTSLVLKTELELGNSDPRSPTPEITRTPLQGKN 225
           Y++TS   SS L +    +  ++S   D    L +  +   S PR  TP ++ T +   +
Sbjct: 241 YSWTS---SSSLQHTRENLHDSTSSLRDHDPSLLSSSKFFRSSPRCSTPSVSSTFVSATS 297

Query: 226 GAK---HNI-TKNMTSERRL 273
             +   +++ TKN +S + L
Sbjct: 298 EPEVETYSVSTKNSSSNKNL 317


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 19/67 (28%), Positives = 28/67 (41%)
 Frame = +1

Query: 76  LLDYINNKMGSNSSKPTDTSLVLKTELELGNSDPRSPTPEITRTPLQGKNGAKHNITKNM 255
           L+     + G  S+ P D  L  +T  E   +  +S TP+ T TP +         TKN 
Sbjct: 471 LVSQEKERKGYTSASP-DRPLS-QTITESSVAKTKSTTPKSTDTPTEATTSPVKVSTKNS 528

Query: 256 TSERRLN 276
            +   LN
Sbjct: 529 NTTENLN 535


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +3

Query: 255 DLRKTFESTNGDEKLIHNNPILSAVIKNHLQSYDPRSPTQDFERTPIIISSKI 413
           DL +  +    +  L  N  +L    +  + SY  +S T+D   T  IISS++
Sbjct: 505 DLARQVQVLLHELDLCENGIVLGVDSRKKINSYVEKSLTEDETDTDQIISSRL 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,847,970
Number of Sequences: 5004
Number of extensions: 39443
Number of successful extensions: 105
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)