Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0233
         (457 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662...    29   1.8  
03_05_0665 + 26554362-26554796                                         27   5.4  
03_03_0200 - 15396187-15396246,15396345-15396566,15396645-153971...    27   5.4  
11_05_0104 + 19091507-19092091,19092669-19092752,19094597-19094746     27   9.5  
10_07_0015 + 11813465-11813479,11814342-11814422,11814842-118149...    27   9.5  
05_03_0560 + 15468430-15468437,15468971-15469052,15469132-154692...    27   9.5  

>03_02_0234 +
           6625417-6626184,6626314-6626339,6626435-6626531,
           6627009-6627116,6627194-6627328,6627429-6627528,
           6627763-6627974,6628060-6628125,6628231-6628464,
           6628583-6628641,6628716-6628782,6628863-6629192,
           6629267-6629335,6629417-6629503,6629605-6629692,
           6630057-6630178,6630251-6630355,6630442-6630485,
           6630558-6630627,6630711-6630814,6630980-6631189,
           6632935-6633018,6633291-6634003,6634115-6634649,
           6634703-6634789,6634826-6634970,6635049-6635125,
           6635215-6635359,6635462-6635626,6635725-6635958
          Length = 1761

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/16 (75%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
 Frame = -1

Query: 364 DRGSY-DCKWFFITAD 320
           DRGSY  C+WFF TAD
Sbjct: 317 DRGSYFSCQWFFRTAD 332


>03_05_0665 + 26554362-26554796
          Length = 144

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 121 PTDTSLVLKTELELGNSDPRSPTPEITRTPLQGKNGAKHNITKNM 255
           PT T  V  T L L +S   +PT     TPL G    +H+  +N+
Sbjct: 39  PTATPPVGATHLPLISSLHTAPTLTTIATPLVGAQHTRHHAAQNL 83


>03_03_0200 -
           15396187-15396246,15396345-15396566,15396645-15397102,
           15397183-15397645
          Length = 400

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 79  LDYINNKMGSNSSKPTDTSLVLKTELELGNSDP-RSPT 189
           +D +   +G +   P D+ LVL TE ELG  DP RSPT
Sbjct: 132 VDCMRRLLGESFGFPADSILVL-TE-ELGEGDPSRSPT 167


>11_05_0104 + 19091507-19092091,19092669-19092752,19094597-19094746
          Length = 272

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/27 (44%), Positives = 21/27 (77%)
 Frame = +1

Query: 340 IYNHMIPDLQLKILNELPLLYLRKLMI 420
           +Y+++I D+ L + N+LPLL L+KL +
Sbjct: 163 LYSYIISDMLL-VENQLPLLLLQKLTL 188


>10_07_0015 +
           11813465-11813479,11814342-11814422,11814842-11814951,
           11815553-11815608,11816086-11816180,11817021-11817126,
           11817261-11817577,11817666-11817848,11817976-11818173,
           11819029-11819346,11819721-11819813
          Length = 523

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = +3

Query: 315 ILSAVIKNHLQSYDP 359
           +LS++++ HLQ+YDP
Sbjct: 44  LLSSILRTHLQAYDP 58


>05_03_0560 +
           15468430-15468437,15468971-15469052,15469132-15469218,
           15469604-15469788,15470047-15470050
          Length = 121

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -1

Query: 226 HFFLAKESVLFQVLEIEGPSYQVLIQFLVPKRCRLVYLNY 107
           H    K S L   +++E P    + +  +P  CR+ Y N+
Sbjct: 56  HTIQLKPSSLLMEMDVENPFISSISEAQLPSYCRMPYRNH 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,583,233
Number of Sequences: 37544
Number of extensions: 205675
Number of successful extensions: 589
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)