Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0233
         (457 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2560| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.2  
SB_51246| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_27413| Best HMM Match : 7tm_1 (HMM E-Value=6.5e-08)                 28   4.2  
SB_18397| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32)         27   5.6  
SB_54431| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0)                       27   9.7  
SB_15799| Best HMM Match : PH (HMM E-Value=0.76)                       27   9.7  
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)                  27   9.7  
SB_53063| Best HMM Match : DUF359 (HMM E-Value=2.9)                    27   9.7  

>SB_2560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 230

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 294 KLIHNNPILSAVIKNHLQSYDPRSPTQDFERTPI 395
           +++   P ++  + +     DPRSPT  F+RTPI
Sbjct: 11  EMVPETPEMNREVSDVKDFDDPRSPTVYFDRTPI 44


>SB_51246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 269 RLSEVIFFVMLCLAPFFPCKG 207
           R+  V++F + C+A   PCKG
Sbjct: 4   RMQTVLWFALFCMASNLPCKG 24


>SB_27413| Best HMM Match : 7tm_1 (HMM E-Value=6.5e-08)
          Length = 646

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 269 RLSEVIFFVMLCLAPFFPCKG 207
           R+  V++F + C+A   PCKG
Sbjct: 4   RMQTVLWFALFCMASNLPCKG 24


>SB_18397| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32)
          Length = 1626

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 181 SPTPEITRTPLQGKNGAKHNITKNM 255
           +PTP +TR P QG  G +HN  + M
Sbjct: 236 TPTPSLTRKP-QGGQGGQHNGRERM 259


>SB_54431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1023

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 288 DEKLIHNNPILSAVIKNHLQSYDPRSPTQDFERTPIIISSKINDLTMTL 434
           D++   ++P LS  +    ++Y+PR   Q     P +ISS +  LT  L
Sbjct: 13  DKRQYISDP-LSGFLPRQPRAYNPREGNQPIRGRPSLISSALQRLTFRL 60


>SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 2353

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +1

Query: 127 DTSLVLKTELELGNSDPRSPTPEITRTPLQGKNGAKHNIT 246
           D    L T LEL  S    P  + TR  +   N  KH+IT
Sbjct: 824 DEDQTLPTGLELSQSLLSIPKGKATRVDIYVSNATKHDIT 863


>SB_15799| Best HMM Match : PH (HMM E-Value=0.76)
          Length = 836

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 103 GSNSSKPTDTSLVLKTELELGNSDPRSPTP 192
           GS  S+P+ T L LK +     S  RSP+P
Sbjct: 428 GSTGSQPSQTHLSLKEKDRESTSRSRSPSP 457


>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
          Length = 1313

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 103 GSNSSKPTDTSLVLKTELELGNSDPRSPTP 192
           GS  S+P+ T L LK +     S  RSP+P
Sbjct: 302 GSTGSQPSQTHLSLKEKDRESTSRSRSPSP 331


>SB_53063| Best HMM Match : DUF359 (HMM E-Value=2.9)
          Length = 378

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +1

Query: 127 DTSLVLKTELELGNSDPRSPTPEITRTPLQGKNGAKHNIT 246
           D    L T LEL  S    P  + TR  +   N  KH+IT
Sbjct: 69  DEDQTLPTGLELSQSLLSIPKGKATRVDIYVSNATKHDIT 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,913,082
Number of Sequences: 59808
Number of extensions: 261337
Number of successful extensions: 651
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)