Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0233
         (457 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   3.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   4.8  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   6.3  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.4  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 272 KRLSEVIFFVMLCLAPFFPC 213
           K L+ V+   ++C  PFF C
Sbjct: 619 KTLAIVLGVFLICWLPFFTC 638


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +1

Query: 214 QGKNGAKHNITKNMTSERRLNLQTEMKN*YTITPFYLLL*KTIYNHM-IPDLQLKILNEL 390
           Q    ++  + +NM+ + R+     + N +    F+    K  ++ M IP+  L + ++ 
Sbjct: 59  QSWRDSRLRLPENMSEDYRILDVDWLHNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDK 118

Query: 391 PLLYLRKLMI 420
            LLY+ KL +
Sbjct: 119 TLLYMSKLTL 128


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 361 RGSYDCKWFFITADRMGLLCINFSSPFVDSN 269
           RG+ + KW     ++ G L    S  FVD++
Sbjct: 278 RGNNNLKWLVNWGEQWGFLPSKDSLVFVDNH 308


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 95  IKWEVIQVNQPTPL 136
           I WE +   +PTPL
Sbjct: 131 INWEYLDKYKPTPL 144


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
          protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 88 YSPIKSFRNNLCNYTTS 38
          + P+KSFR + C+   S
Sbjct: 8  FLPVKSFRESRCSVRCS 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,489
Number of Sequences: 438
Number of extensions: 2793
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)