Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0227
(862 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0201 - 9762563-9762843,9763037-9763919,9763988-9764036,980... 33 0.39
12_02_1088 - 25954506-25954652,25954769-25954918,25955011-259551... 31 1.2
03_02_0800 + 11337206-11337532,11337634-11337957,11338060-113381... 31 1.6
03_05_0720 + 27114301-27114548,27114647-27114926,27115104-271151... 30 2.7
01_01_0906 - 7124686-7124730,7124854-7124925,7125257-7125383,712... 29 3.6
07_01_0600 - 4462337-4462774 29 4.8
07_01_0010 + 72162-74303,74470-74545,75971-76043,76496-76540,779... 29 6.3
03_05_0451 - 24456923-24457069,24457161-24457310,24457408-244575... 29 6.3
>05_03_0201 -
9762563-9762843,9763037-9763919,9763988-9764036,
9806710-9807680
Length = 727
Score = 32.7 bits (71), Expect = 0.39
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = -3
Query: 353 RCCNLSHANSLQISLCNQMYISHPVHR-GTQRVCSIICSSYTRIDARNFSELFSVKIQVN 177
RC + H S+ ++LC HP T++V +C + T + + S+ S +V
Sbjct: 596 RCGEIGHVASMCLTLCTHCEEDHPPGECPTRKVTCFLCEAPTILCTDSLSKELSSIEEVV 655
Query: 176 GFKNCFPFEQRRV 138
+ P EQR +
Sbjct: 656 SLPDLLPAEQRAI 668
>12_02_1088 -
25954506-25954652,25954769-25954918,25955011-25955116,
25955247-25955569,25955656-25955790,25956310-25956444,
25956445-25956525,25956619-25956807,25956935-25957127,
25957244-25957350,25957457-25957531,25957619-25957774,
25957968-25958051,25958152-25958265,25958345-25958440,
25958543-25958633,25958721-25958836,25958934-25959093,
25960390-25960634
Length = 900
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 463 RHQNKIDCC--RPKTRYNFANSAGIFVLKTIDGVLYKIHLETFI 588
+H + I CC +P + FAN+AG+ +L+T L I LE +
Sbjct: 791 KHSDAILCCSLKPAPMFTFANNAGLDILETTLVNLQDISLEMIL 834
>03_02_0800 +
11337206-11337532,11337634-11337957,11338060-11338194,
11338280-11338519
Length = 341
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 358 LPDAVTCHTQILCRFRCVIKCIYPILSTEVHNVFALSYAV 239
LPD H +IL C+++ I P+ E FA++Y V
Sbjct: 60 LPDVPESHRRILISQGCIVREIEPVYPPENQTQFAMAYYV 99
>03_05_0720 +
27114301-27114548,27114647-27114926,27115104-27115154,
27115679-27116000,27116610-27116718,27116754-27116802
Length = 352
Score = 29.9 bits (64), Expect = 2.7
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = -3
Query: 743 LPSAAKATPQIDS---PSCTLMTRSNVPASSFM*KISFGVEKYNLPLMSLANPLTIKVSK 573
+PSA + PQ +S P C TR +V ++ F E+ + + S+ANPL V
Sbjct: 1 MPSAVSSPPQRESILRPYCVPWTRGSVATAAVAKAAPFRGEQNHKQVASVANPL---VKH 57
Query: 572 CILYKTPS 549
C+ + S
Sbjct: 58 CVRLRLSS 65
>01_01_0906 -
7124686-7124730,7124854-7124925,7125257-7125383,
7125424-7125572,7126126-7126465,7126759-7127090,
7127327-7127860
Length = 532
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +1
Query: 502 RYNFANSAGIFVLKTIDGVLYKIHLETFIVNGFASDINGKLYFSTPNDIFYINED 666
+Y + A + +K + LY+ L T+ A D NGK+ S D FYI ED
Sbjct: 442 QYMEVDEATLRAMKNLSQYLYRSILMTYKHKMHAVDNNGKIVSSADFD-FYIKED 495
>07_01_0600 - 4462337-4462774
Length = 145
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 35 CFRSRKPRSGSTKR*CAQSIPTRSRLPNQHTVL 133
CF S PRS + S P RLP +HT++
Sbjct: 33 CFSSMPPRSRAVDAAYCYSAPVHLRLPVRHTII 65
>07_01_0010 +
72162-74303,74470-74545,75971-76043,76496-76540,
77916-78116,78463-78541,78637-78678,78788-78847,
79087-80484,80777-80902,81037-81300
Length = 1501
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/44 (25%), Positives = 19/44 (43%)
Frame = -3
Query: 278 HRGTQRVCSIICSSYTRIDARNFSELFSVKIQVNGFKNCFPFEQ 147
HRG C+++C Y + +LF + + F N F +
Sbjct: 148 HRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNK 191
>03_05_0451 -
24456923-24457069,24457161-24457310,24457408-24457513,
24457715-24458040,24458129-24458263,24458350-24458430,
24458516-24458704,24458794-24458986,24459068-24459174,
24459280-24459354,24459446-24459601,24459745-24459828,
24459933-24460046,24460119-24460214,24460302-24460392,
24460500-24460615,24460878-24461037,24461964-24462217
Length = 859
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 463 RHQNKIDCCRPKTR--YNFANSAGIFVLKTIDGVLYKIHLETFI 588
+H + I CC K + FAN AG+ +L+T L I LE +
Sbjct: 750 QHSDSIMCCSLKAAPVFTFANQAGLDMLETTLIALQDISLEKIL 793
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,584,291
Number of Sequences: 37544
Number of extensions: 447765
Number of successful extensions: 1067
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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