Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0227
         (862 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20985| Best HMM Match : Neur_chan_memb (HMM E-Value=4.3e-10)        30   2.8  
SB_47082| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  
SB_25562| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  
SB_19426| Best HMM Match : Calx-beta (HMM E-Value=3e-06)               28   8.5  

>SB_20985| Best HMM Match : Neur_chan_memb (HMM E-Value=4.3e-10)
          Length = 517

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +2

Query: 257 KHVVYLGGQDGIYTFDYTTKSAKNLRVTSYSIWQMF 364
           K ++ LGG     T D T  SA N R  +Y+IW MF
Sbjct: 472 KVIISLGGD----TCDGTLGSAANARALAYNIWNMF 503


>SB_47082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 908

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +2

Query: 44  SRKPRSGSTKR*CAQSIPTRSRLPNQHTVLQSLFFVRRENSS 169
           S+KP +GS K+ C+QS      L +  +  +S+F V+R +SS
Sbjct: 382 SKKPSTGS-KQLCSQSETMSQSLGSNESRTESIFTVKRMHSS 422


>SB_25562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = -1

Query: 487 SNQSCFDVGEFRYRSYLTVRIDKRFFVRIESREVEAVDGTMEHLPDAVTCHTQILCRFRC 308
           +NQ  FD+    Y + +   + K +  R+   E+EA    + +LP     H Q   R R 
Sbjct: 106 ANQELFDM----YMTAVDDFVAKGYARRVREEELEASGKPLWYLPHHPVAHAQKKGRVRV 161

Query: 307 VIKCIYPILSTEVHN 263
           V  C     ST +++
Sbjct: 162 VFHCAAKYNSTSLND 176


>SB_19426| Best HMM Match : Calx-beta (HMM E-Value=3e-06)
          Length = 631

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 580 TFIVNGFASDINGKLYFSTPNDIFYINEDAGTLDRVI 690
           T  +N  A + NG++ FST +    + E  G+L R +
Sbjct: 581 TLFINVTAGNANGEVGFSTSHQSLVVQEPEGSLPRAV 617


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,060,803
Number of Sequences: 59808
Number of extensions: 563125
Number of successful extensions: 1402
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1402
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)