Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0227
         (862 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55373-2|AAX88832.1|  349|Caenorhabditis elegans Serpentine rece...    29   5.6  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    29   5.6  

>U55373-2|AAX88832.1|  349|Caenorhabditis elegans Serpentine
           receptor, class h protein76, isoform b protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 668 ASSFM*KISFGVEKYNLPLMSLAN-PLTIKVSKCILYKTPSIVFST 534
           ++SFM    F V  Y L L ++ N PL +    CIL KTP  + ST
Sbjct: 22  STSFMSSTDFIV--YPLQLSTILNIPLFVLAGYCILQKTPKSIGST 65


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
            x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = +1

Query: 448  CT*THRHQNKIDCCRP----KTRYNFANSAGIFVLKTIDGVLYKIHLETFIVNGFASDIN 615
            CT    H  +   CRP     ++  F N AG+   KT  G L       F+V  F   +N
Sbjct: 1459 CTCDDHHFAEDGYCRPIEARSSKVQFVNGAGL--RKTSSGCLRPDETPQFVVLTFDDAVN 1516

Query: 616  GKLY 627
            GK +
Sbjct: 1517 GKTF 1520


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,743,206
Number of Sequences: 27780
Number of extensions: 436123
Number of successful extensions: 1199
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)