Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0227
         (862 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60690.1 68418.m07616 homeodomain-leucine zipper protein Revo...    31   1.3  
At5g30500.1 68418.m03751 galactinol synthase, putative similar t...    29   4.0  
At2g47180.1 68415.m05892 galactinol synthase, putative similar t...    29   4.0  
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea...    29   5.3  
At4g26250.1 68417.m03778 galactinol synthase, putative similar t...    28   7.0  
At1g56600.1 68414.m06509 galactinol synthase, putative similar t...    28   7.0  
At1g09350.1 68414.m01046 galactinol synthase, putative contains ...    28   7.0  
At5g23790.1 68418.m02793 galactinol synthase, putative similar t...    28   9.2  

>At5g60690.1 68418.m07616 homeodomain-leucine zipper protein
           Revoluta (REV) / fascicular fiberless 1 (IFL1) identical
           to HD-zip transcription factor Revoluta (GI:9759333)
           {Arabidopsis thaliana}; contains Pfam profiles PF01852:
           START domain and PF00046: Homeobox domain
          Length = 842

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 466 HQNKIDCC--RPKTRYNFANSAGIFVLKTIDGVLYKIHLE 579
           HQ+ I CC  +P+  + FAN AG+ +L+T    L  I LE
Sbjct: 730 HQDAILCCSLKPQPVFMFANQAGLDMLETTLVALQDITLE 769


>At5g30500.1 68418.m03751 galactinol synthase, putative similar to
           galactinol synthase, isoform GolS-1 GI:5608497 from
           [Ajuga reptans]
          Length = 328

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 358 LPDAVTCHTQILCRFRCVIKCIYPILSTEVHNVFALSYAV 239
           LPD    H QIL    C+I+ I P+   E    +A++Y V
Sbjct: 62  LPDVPKEHRQILVAQGCIIREIEPVYPPENQAGYAMAYYV 101


>At2g47180.1 68415.m05892 galactinol synthase, putative similar to
           galactinol synthase, isoform GolS-1 GI:5608497 from
           [Ajuga reptans]
          Length = 344

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 358 LPDAVTCHTQILCRFRCVIKCIYPILSTEVHNVFALSYAV 239
           LPD    H +IL    C+++ I P+   E    FA++Y V
Sbjct: 67  LPDVPEEHRRILVDQGCIVREIEPVYPPENQTQFAMAYYV 106


>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
           family protein fizzy-related (FZR); contains 6 WD-40
           repeats (PF00400); WD-repeat protein,
           carrot,(gi:2253631) PIR:T14352
          Length = 428

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +1

Query: 541 KTIDGVLYKIHLETFIVNGFASDINGKLYFSTPNDIFYINEDAGTLDRVIRVQEGES 711
           KTID +  K H      +GF+     + YF+ P D F  N  +  L + I  + G S
Sbjct: 30  KTIDSLWKKPHGSDLTWSGFSRVGVTEAYFAVPVDHFLTNPPSLRLSQTIYCRRGSS 86


>At4g26250.1 68417.m03778 galactinol synthase, putative similar to
           galactinol synthase, isoform GolS-1 [Ajuga reptans]
           GI:5608497; contains Pfam profile: PF01501 glycosyl
           transferase family 8
          Length = 336

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 358 LPDAVTCHTQILCRFRCVIKCIYPILSTEVHNVFALSYAV 239
           LPD    H QIL    C+I+ I P+   E    ++++Y V
Sbjct: 62  LPDVPEEHRQILLAQGCIIREIEPVYPPENKTGYSMAYYV 101


>At1g56600.1 68414.m06509 galactinol synthase, putative similar to
           galactinol synthase, isoform GolS-1 GI:5608497 from
           [Ajuga reptans]
          Length = 335

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 358 LPDAVTCHTQILCRFRCVIKCIYPILSTEVHNVFALSYAV 239
           LPD    H + L    CV+K I P+   E    FA++Y V
Sbjct: 59  LPDVPEDHRKQLVDQGCVVKEIEPVYPPENQTEFAMAYYV 98


>At1g09350.1 68414.m01046 galactinol synthase, putative contains
           Pfam profile: PF01501 glycosyl transferase family 8
          Length = 334

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 358 LPDAVTCHTQILCRFRCVIKCIYPILSTEVHNVFALSYAV 239
           LPD    H + L    CVIK I P+   +    FA++Y V
Sbjct: 53  LPDVPADHRRQLLDQGCVIKEIQPVYPPDNQTQFAMAYYV 92


>At5g23790.1 68418.m02793 galactinol synthase, putative similar to
           galactinol synthase, isoform GolS-1 GI:5608497 from
           [Ajuga reptans]; contains Pfam profile: PF01501 glycosyl
           transferase family 8
          Length = 333

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 358 LPDAVTCHTQILCRFRCVIKCIYPILSTEVHNVFALSYAV 239
           LPD    H QIL    C+I+ I P+   E    ++++Y V
Sbjct: 59  LPDVPEEHRQILVDQGCIIRDIEPVYPPENTTGYSMAYYV 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,173,419
Number of Sequences: 28952
Number of extensions: 388260
Number of successful extensions: 934
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)