Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0225
         (708 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DC0923 Cluster: UPI0000DC0923 related cluster; n...    75   2e-12
UniRef50_Q9TS94 Cluster: Epidermal growth factor inhibitor; n=2;...    55   2e-06
UniRef50_P38543 Cluster: GTP-binding nuclear protein Ran; n=2; G...    50   4e-05
UniRef50_Q9VUN3 Cluster: GTP-binding nuclear protein Ran-like; n...    48   2e-04
UniRef50_UPI00005A251C Cluster: PREDICTED: similar to RAN, membe...    46   0.001
UniRef50_Q5EHZ5 Cluster: GekBS156P; n=1; Gekko japonicus|Rep: Ge...    38   0.18 
UniRef50_UPI0000EBD6B3 Cluster: PREDICTED: similar to Chain A, C...    36   1.3  
UniRef50_Q8IDT6 Cluster: ABC transporter, putative; n=1; Plasmod...    35   1.7  
UniRef50_Q54HY3 Cluster: Putative uncharacterized protein Pde4; ...    35   2.3  
UniRef50_Q6E6E6 Cluster: GTP-binding nuclear protein-like protei...    34   3.0  
UniRef50_Q22NN6 Cluster: Hypothetical repeat containing protein;...    33   6.9  
UniRef50_A0DGI6 Cluster: Chromosome undetermined scaffold_5, who...    33   9.1  
UniRef50_Q6MYA2 Cluster: Zinc finger protein, putative; n=2; Asp...    33   9.1  

>UniRef50_UPI0000DC0923 Cluster: UPI0000DC0923 related cluster; n=1;
           Rattus norvegicus|Rep: UPI0000DC0923 UniRef100 entry -
           Rattus norvegicus
          Length = 133

 Score = 74.9 bits (176), Expect = 2e-12
 Identities = 36/57 (63%), Positives = 40/57 (70%)
 Frame = -1

Query: 708 PFLWLARKLIGDGNLEFVAMPALLPPEVTMDPQWQNQIEKDLQDAQNTALPEEDEDL 538
           PFLWL+RKL GD NLEFVAM A    EV MDP    Q E DL+  Q TALP+ED+DL
Sbjct: 77  PFLWLSRKLTGDPNLEFVAMLAFASSEVVMDPPLAAQYEHDLEVTQRTALPDEDDDL 133


>UniRef50_Q9TS94 Cluster: Epidermal growth factor inhibitor; n=2;
           Eutheria|Rep: Epidermal growth factor inhibitor -
           Oryctolagus cuniculus (Rabbit)
          Length = 48

 Score = 54.8 bits (126), Expect = 2e-06
 Identities = 26/36 (72%), Positives = 27/36 (75%)
 Frame = -1

Query: 687 KLIGDGNLEFVAMPALLPPEVTMDPQWQNQIEKDLQ 580
           KLIGD NLEFVAMPAL PPEV MDP    Q E DL+
Sbjct: 12  KLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLE 47


>UniRef50_P38543 Cluster: GTP-binding nuclear protein Ran; n=2;
           Giardia intestinalis|Rep: GTP-binding nuclear protein
           Ran - Giardia lamblia (Giardia intestinalis)
          Length = 226

 Score = 50.4 bits (115), Expect = 4e-05
 Identities = 22/54 (40%), Positives = 32/54 (59%)
 Frame = -1

Query: 708 PFLWLARKLIGDGNLEFVAMPALLPPEVTMDPQWQNQIEKDLQDAQNTALPEED 547
           P L + R L+ D  ++F   PALLP ++ MD   + QI KDL+   N  LP++D
Sbjct: 173 PILSILRTLLNDPTIQFSQAPALLPADIGMDAATREQINKDLEAVNNVPLPDDD 226


>UniRef50_Q9VUN3 Cluster: GTP-binding nuclear protein Ran-like;
           n=88; Eukaryota|Rep: GTP-binding nuclear protein
           Ran-like - Drosophila melanogaster (Fruit fly)
          Length = 217

 Score = 48.4 bits (110), Expect = 2e-04
 Identities = 20/51 (39%), Positives = 32/51 (62%)
 Frame = -1

Query: 708 PFLWLARKLIGDGNLEFVAMPALLPPEVTMDPQWQNQIEKDLQDAQNTALP 556
           PF++L RKL+GD +L+ V  PA+ PP+V    +   Q+E    +A++  LP
Sbjct: 160 PFVYLLRKLVGDPSLQLVQSPAIQPPKVVFTDEMSRQVESLFNEAKSKPLP 210


>UniRef50_UPI00005A251C Cluster: PREDICTED: similar to RAN, member
           RAS oncogene family; n=1; Canis lupus familiaris|Rep:
           PREDICTED: similar to RAN, member RAS oncogene family -
           Canis familiaris
          Length = 196

 Score = 46.0 bits (104), Expect = 0.001
 Identities = 18/31 (58%), Positives = 23/31 (74%)
 Frame = -1

Query: 705 FLWLARKLIGDGNLEFVAMPALLPPEVTMDP 613
           FLWLA KL GD NLEF+ +P L PP++ + P
Sbjct: 160 FLWLAIKLTGDPNLEFITVPPLAPPDIVIHP 190


>UniRef50_Q5EHZ5 Cluster: GekBS156P; n=1; Gekko japonicus|Rep:
           GekBS156P - Gecko japonicus (Japanese gecko)
          Length = 81

 Score = 38.3 bits (85), Expect = 0.18
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = -1

Query: 708 PFLWLARKLIGDGNLEF 658
           PFLWLARKLIGD NLEF
Sbjct: 44  PFLWLARKLIGDPNLEF 60


>UniRef50_UPI0000EBD6B3 Cluster: PREDICTED: similar to Chain A,
           Canine Gdp-Ran R76e Mutant; n=2; Bos taurus|Rep:
           PREDICTED: similar to Chain A, Canine Gdp-Ran R76e
           Mutant - Bos taurus
          Length = 123

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 17/30 (56%), Positives = 18/30 (60%)
 Frame = -1

Query: 702 LWLARKLIGDGNLEFVAMPALLPPEVTMDP 613
           LW A  L  D +LE  A PAL PPEV  DP
Sbjct: 93  LWRAGGLTRDSDLESAAEPALAPPEVVEDP 122


>UniRef50_Q8IDT6 Cluster: ABC transporter, putative; n=1; Plasmodium
           falciparum 3D7|Rep: ABC transporter, putative -
           Plasmodium falciparum (isolate 3D7)
          Length = 925

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 120 CVYMLLVYKELSYKFVYMCIINNSDQIGINTYWAINAKCFYDNCNKMN 263
           C++   +Y+ L Y  V + I NN++    N Y+   +KC + N N  N
Sbjct: 665 CIFNRTIYENLIYGLVPLYIKNNNNNNNNNYYYQYLSKCIFQNMNPGN 712


>UniRef50_Q54HY3 Cluster: Putative uncharacterized protein Pde4;
           n=2; Dictyostelium discoideum|Rep: Putative
           uncharacterized protein Pde4 - Dictyostelium discoideum
           AX4
          Length = 771

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 18/75 (24%), Positives = 36/75 (48%)
 Frame = +3

Query: 9   CFLHFI*KVSPQFNFSVKYCQSLHVTKVRNNFKIIILCVYMLLVYKELSYKFVYMCIINN 188
           CF +F+ K+   ++ +  Y  S+H T V +N    I   +   +     +  +   II++
Sbjct: 322 CFKNFMRKIESGYDSTNPYHNSIHATDVLHNLNYFIEKSFGKFLTDIELFSMILAAIIHD 381

Query: 189 SDQIGINTYWAINAK 233
               G+N ++ IN+K
Sbjct: 382 FKHPGVNNHFQINSK 396


>UniRef50_Q6E6E6 Cluster: GTP-binding nuclear protein-like protein;
           n=1; Antonospora locustae|Rep: GTP-binding nuclear
           protein-like protein - Antonospora locustae (Nosema
           locustae)
          Length = 213

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
 Frame = -1

Query: 708 PFLWLARKLIGDGNLEFVAMPALLPPEVTMD---PQWQNQIEKDLQDAQN 568
           PFL LARKL G  NL FV+   L P ++ +D    +  N+I  +LQ+A++
Sbjct: 163 PFLALARKLTGIDNLTFVSNLNLKPADIPIDIKSIEESNRIMVELQNARD 212


>UniRef50_Q22NN6 Cluster: Hypothetical repeat containing protein; n=2;
            Tetrahymena thermophila SB210|Rep: Hypothetical repeat
            containing protein - Tetrahymena thermophila SB210
          Length = 2993

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 18/57 (31%), Positives = 32/57 (56%)
 Frame = -3

Query: 520  CTQCHFVIGGSCKCVQCSVH*IFSFH*VIANEHYFNNLLNLQSFALINVKSLDNLTR 350
            C QC  +I G  +C+QC+ + + S   +I N+ YF   L  Q+    N+K++ +L +
Sbjct: 1477 CQQCT-LINGQPQCIQCNYNLLAS---LIQNQQYFIGTLYYQNAQDFNIKNMVSLNK 1529


>UniRef50_A0DGI6 Cluster: Chromosome undetermined scaffold_5, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_5,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1618

 Score = 32.7 bits (71), Expect = 9.1
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +3

Query: 39  PQFNFSVKYCQSLHVTKVRNNFKIIILCVYMLLVYKELSYKFVYMCIINNSDQIGINTY 215
           P   F+    +S+ +    +NF +++LC+ +LLV KE++      C I NS    +N Y
Sbjct: 47  PSLLFTTNVLKSILIIPYSSNFSLMLLCL-ILLVLKEVT--LAIFCTIENSTYKIVNKY 102


>UniRef50_Q6MYA2 Cluster: Zinc finger protein, putative; n=2;
            Aspergillus fumigatus|Rep: Zinc finger protein, putative
            - Aspergillus fumigatus (Sartorya fumigata)
          Length = 1650

 Score = 32.7 bits (71), Expect = 9.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 510  HWVHPLIIFISLHLPQEEQYFVHLEDLFQFGSAIE 614
            H+V+ L+IFI   LP +EQY   ++D    G  +E
Sbjct: 1366 HFVNALLIFIQKSLPVQEQYVASIKDSDSLGPLLE 1400


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 674,290,396
Number of Sequences: 1657284
Number of extensions: 13632314
Number of successful extensions: 32420
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 31036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32413
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)