Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0225
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54971| Best HMM Match : Ras (HMM E-Value=0)                         93   2e-19
SB_47681| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_23855| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_10922| Best HMM Match : UPF0203 (HMM E-Value=9.4)                   29   3.7  
SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_18788| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  

>SB_54971| Best HMM Match : Ras (HMM E-Value=0)
          Length = 239

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 41/56 (73%), Positives = 46/56 (82%)
 Frame = -1

Query: 708 PFLWLARKLIGDGNLEFVAMPALLPPEVTMDPQWQNQIEKDLQDAQNTALPEEDED 541
           PFLWLARKL+GD NLEFV MPAL PPEV MDP    Q E+DL DAQNTALP+ED++
Sbjct: 182 PFLWLARKLVGDPNLEFVEMPALQPPEVQMDPNMAKQYEQDLNDAQNTALPDEDDE 237


>SB_47681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = -3

Query: 619 GSSMAEPN*KRSSRCTKYCSS*GR*RLINMINGC--TQCHFVIGGSCKCVQCS 467
           G S  +P+  +S RC K C++ G+  L+  ++G     C F    SC+CV+CS
Sbjct: 7   GMSSKQPD--KSKRCRK-CTAHGKISLLRGLSGMHSEDCEFA---SCQCVECS 53


>SB_23855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/43 (37%), Positives = 28/43 (65%)
 Frame = +3

Query: 51  FSVKYCQSLHVTKVRNNFKIIILCVYMLLVYKELSYKFVYMCI 179
           FS K   S+H  K+ NN K++++ V ++LV+  LS+   Y+C+
Sbjct: 283 FSAKN-MSIHRAKLHNNGKVVVILVLIVLVFM-LSWG-PYLCL 322


>SB_10922| Best HMM Match : UPF0203 (HMM E-Value=9.4)
          Length = 400

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -2

Query: 293 QQKYEYYLCVVHFVTVVI---KTFCIDCPICVNAYLVTVI 183
           +  Y+Y  C++H++ + +   K +  D   C+N Y++  +
Sbjct: 290 RDNYDYKKCIIHYIIITLNRQKGYNYDYKKCINHYIIITL 329


>SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = -1

Query: 270 MCSSFCYSCHKNILH*LPNMC*CLFGHCYL*YTCKQICMITLCKPIAC 127
           +C S C  C + ++     +C C  GH      C Q   + +C   AC
Sbjct: 384 VCVSLCAQCVRVVMC---TVCACRLGHSVCVSLCAQCVRVVMCTVCAC 428


>SB_18788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 820

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 144 KELSYKFVYMCIINNSDQIGINTYWAINAKCFYDNCNKM 260
           + +SYK +Y    NN+ Q+   +YW +N  C  D+   +
Sbjct: 166 QNISYKNIYCAKCNNASQL---SYWLMNITCENDDMESL 201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,173,020
Number of Sequences: 59808
Number of extensions: 445505
Number of successful extensions: 1161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)